Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K5P74_RS13240 Genome accession   NZ_CP081846
Coordinates   2662855..2664639 (-) Length   594 a.a.
NCBI ID   WP_222226096.1    Uniprot ID   A0AAW8TCS8
Organism   Enterococcus raffinosus strain CX012922     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2657855..2669639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS13235 (K5P74_13235) - 2658322..2662194 (-) 3873 WP_222226095.1 VWA domain-containing protein -
  K5P74_RS13240 (K5P74_13240) rcrQ 2662855..2664639 (-) 1785 WP_222226096.1 ABC transporter ATP-binding protein Regulator
  K5P74_RS13245 (K5P74_13245) rcrP 2664632..2666398 (-) 1767 WP_222226097.1 ABC transporter ATP-binding protein Regulator
  K5P74_RS13250 (K5P74_13250) - 2666500..2666928 (-) 429 WP_028020634.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5P74_RS13255 (K5P74_13255) - 2666988..2667323 (-) 336 WP_010745126.1 hypothetical protein -
  K5P74_RS13260 (K5P74_13260) - 2667468..2668847 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  K5P74_RS13265 (K5P74_13265) - 2668851..2669285 (-) 435 WP_010745124.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66270.20 Da        Isoelectric Point: 5.2354

>NTDB_id=597727 K5P74_RS13240 WP_222226096.1 2662855..2664639(-) (rcrQ) [Enterococcus raffinosus strain CX012922]
MDNTLENIQTQPKAHPLRKNILNALNQYKWPLILAIIFATIGSITQIVGPNRLSEITDLITQGLRGSINLTQISHIGLSL
VLLYVIGAVLSYFQGFIVATVTQRFSKQMRRQISEKINAVPLNYFDSHSQGDTLSRVTNDLDTVSQSLNQSLSSLFPSIT
LFIGCLIMMFRTNLILTITSVISVLLGFLFMAVIMAKSQVHFNQQQEKLANISGFAEEAYSGQQVINAYSAAEDMKTEFG
EMNQDFYGSVWKAQFLSGIMQPLMGFIGNFGYVAVCVVGAVLALRGDITLGVIVAFTVYIRLFSQPLSQLAQAFSNLQSA
AAAMNRVFEFLAAEELADESEKITKLRKPEGNVRFENVSFGYEKERTIIHHFSVEAKAGQKIAIVGPTGAGKTTIVNLLM
RFYETNHGEIIIDGVSTKDMTREEVHDQFCMVLQDTWLFEGTIKENLIYNQQHVTDEAVVKACKAVGIDHFIRTLPKGYD
TYLDDSVSLSVGQKQLLTIARAIIKDAPMLILDEATSSVDTRTEELIQAAMDQLMNNRTSFVIAHRLSTIRNADLILVMK
EGNIIEQGNHEELMDEQGFYADLYNSQFEKEQLV

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=597727 K5P74_RS13240 WP_222226096.1 2662855..2664639(-) (rcrQ) [Enterococcus raffinosus strain CX012922]
ATGGATAATACATTGGAAAATATTCAAACACAACCAAAGGCACATCCTTTGCGCAAAAATATTTTAAACGCGTTGAATCA
ATACAAATGGCCGCTGATTTTAGCGATCATCTTTGCAACGATCGGGAGTATCACACAAATCGTCGGACCGAATCGATTAA
GTGAAATTACAGATTTGATTACTCAAGGCCTGCGAGGATCGATCAATCTCACACAAATCAGCCACATTGGCTTAAGTTTA
GTTCTATTATATGTAATCGGTGCGGTTCTCTCTTATTTTCAAGGCTTCATCGTAGCGACAGTAACACAACGCTTTTCAAA
ACAAATGCGTCGTCAGATATCGGAAAAGATTAATGCTGTGCCGTTGAATTATTTTGATTCTCACAGTCAGGGGGATACCT
TGAGTCGTGTGACCAATGACCTAGATACAGTGAGCCAATCCTTGAATCAAAGCTTGAGCTCCTTGTTTCCATCAATCACG
CTTTTTATCGGTTGTCTGATCATGATGTTTCGAACAAATCTTATATTAACAATCACCTCAGTCATTTCTGTTCTATTAGG
CTTTTTATTCATGGCGGTCATTATGGCTAAATCCCAAGTCCATTTTAATCAGCAACAGGAAAAGCTTGCGAATATCAGCG
GCTTTGCTGAAGAGGCGTATTCTGGACAACAGGTCATTAATGCATACAGCGCCGCAGAGGATATGAAGACTGAGTTTGGT
GAGATGAATCAGGATTTTTATGGCAGTGTGTGGAAGGCACAATTCTTATCTGGGATCATGCAGCCGTTAATGGGCTTTAT
TGGAAATTTTGGGTATGTTGCAGTCTGCGTAGTTGGCGCTGTTTTAGCTCTGAGAGGCGACATCACTCTTGGAGTGATCG
TCGCGTTTACTGTCTATATCCGCTTGTTTTCACAGCCGCTATCACAGTTGGCGCAAGCTTTTTCGAATCTGCAGTCGGCG
GCAGCGGCAATGAATCGTGTGTTTGAATTTTTAGCCGCAGAGGAATTGGCTGATGAATCAGAAAAAATAACCAAATTACG
GAAGCCGGAAGGCAATGTTCGCTTCGAGAATGTCAGCTTTGGCTATGAAAAAGAACGAACGATCATTCATCATTTCAGTG
TCGAAGCGAAGGCGGGTCAAAAAATCGCGATTGTTGGTCCAACTGGAGCAGGGAAGACAACGATCGTTAATCTGCTGATG
CGCTTTTACGAAACCAATCATGGAGAGATTATAATTGATGGTGTGTCCACAAAGGATATGACGCGAGAAGAGGTCCACGA
CCAATTTTGTATGGTATTGCAGGATACTTGGCTATTTGAAGGAACGATCAAAGAAAATCTGATTTACAATCAGCAGCATG
TTACCGACGAAGCGGTGGTAAAGGCGTGTAAAGCAGTAGGGATTGATCACTTTATCCGAACACTGCCGAAGGGCTATGAT
ACTTACCTAGATGATAGTGTGAGCTTATCTGTTGGACAAAAACAATTATTGACGATTGCTCGTGCGATCATAAAAGACGC
ACCGATGCTGATTCTAGATGAGGCCACTAGTTCTGTGGATACCCGAACAGAGGAGTTGATTCAAGCAGCGATGGATCAAT
TAATGAATAATCGAACTTCCTTCGTCATCGCTCATCGACTATCCACCATTCGAAATGCGGATCTGATTTTGGTCATGAAA
GAAGGAAACATTATCGAGCAAGGGAACCATGAAGAGCTGATGGATGAACAAGGCTTTTACGCTGACCTATACAATAGTCA
GTTTGAGAAAGAACAGCTTGTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-517)

ABC transporter transmembrane region (ABC_membrane)

(32-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

63.511

97.811

0.621