Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K5P74_RS09870 Genome accession   NZ_CP081846
Coordinates   1987032..1988702 (-) Length   556 a.a.
NCBI ID   WP_222225656.1    Uniprot ID   A0AAW8T4G9
Organism   Enterococcus raffinosus strain CX012922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982032..1993702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS09840 (K5P74_09840) - 1982148..1984337 (-) 2190 WP_222225654.1 penicillin-binding transpeptidase domain-containing protein -
  K5P74_RS09845 (K5P74_09845) ftsL 1984338..1984715 (-) 378 WP_028020318.1 cell division protein FtsL -
  K5P74_RS09850 (K5P74_09850) rsmH 1984721..1985674 (-) 954 WP_222225655.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  K5P74_RS09855 (K5P74_09855) mraZ 1985690..1986121 (-) 432 WP_010745913.1 division/cell wall cluster transcriptional repressor MraZ -
  K5P74_RS09860 (K5P74_09860) - 1986290..1986661 (-) 372 WP_010745912.1 DUF3397 domain-containing protein -
  K5P74_RS09865 (K5P74_09865) - 1986889..1987005 (+) 117 WP_010745911.1 DUF4044 domain-containing protein -
  K5P74_RS09870 (K5P74_09870) recN 1987032..1988702 (-) 1671 WP_222225656.1 DNA repair protein RecN Machinery gene
  K5P74_RS09875 (K5P74_09875) - 1988731..1989189 (-) 459 WP_222225657.1 arginine repressor -
  K5P74_RS09880 (K5P74_09880) - 1989205..1990020 (-) 816 WP_222225658.1 TlyA family RNA methyltransferase -
  K5P74_RS09885 (K5P74_09885) - 1990065..1990949 (-) 885 WP_222225659.1 polyprenyl synthetase family protein -
  K5P74_RS09890 (K5P74_09890) - 1990949..1991170 (-) 222 WP_010745906.1 exodeoxyribonuclease VII small subunit -
  K5P74_RS09895 (K5P74_09895) xseA 1991170..1992504 (-) 1335 WP_222225660.1 exodeoxyribonuclease VII large subunit -
  K5P74_RS09900 (K5P74_09900) - 1992520..1993377 (-) 858 WP_222225661.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62869.19 Da        Isoelectric Point: 4.5564

>NTDB_id=597718 K5P74_RS09870 WP_222225656.1 1987032..1988702(-) (recN) [Enterococcus raffinosus strain CX012922]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSDKCLVEGLFDLPKQHEFSLLM
EELGIEVDDAGLIVQRDLNISGKSVSRVNGRIITLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDSAFQEKKN
RYQTAYHSYITLMNQVRKFKQNEQSFVQRIDMLTFQQEEIGNAELSIGEEEKLMEEREKLTNYQKIVDSLSYSYQAMTNE
ETNSLDAIGSASQELQTIASLDADYESISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDIVNERLELIHQLKRKYGDS
IEIILNYYDHISEELLDSDFSGDKLERLEKELYEKENELKHLAEMLQVARKKMAKELESAIQNELKDLYMENARFEVSFK
ESSFNAEGVDEVEFYITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GLNSQALCITHLPQVAAKADHQLFIRKEIVDGRTLTKVEELTERDRIDEIARMLAGAEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=597718 K5P74_RS09870 WP_222225656.1 1987032..1988702(-) (recN) [Enterococcus raffinosus strain CX012922]
ATGTTGCAAGAGCTAACAATCAAAAATTTTGCGATCATTTCTTCGTTGCATTTAGGATTTACTGATGGAATGACAGCTCT
AACTGGCGAAACAGGCGCTGGAAAATCAATTATTATTGATGCAGTTAGCTTGTTAGCTGGAGCTCGTTCATCCATCGAAT
ATATTCGCCAAGGTAGTGATAAATGTTTAGTTGAGGGGCTTTTTGATTTGCCTAAGCAACATGAGTTCAGTCTACTAATG
GAAGAACTTGGAATTGAAGTAGATGATGCAGGATTGATCGTTCAAAGAGATTTGAATATCTCAGGAAAAAGTGTCTCACG
AGTGAACGGAAGAATTATTACTTTGGCGAACTTACGAAGAATTGGTCAATTCTTAGTAGACATTCAAGGCCAAAACGACC
ACCAGGAATTGATGCATCCAGAATCGCATCTCCGTCTTTTAGATAGTTTTGGTGACTCGGCTTTTCAAGAGAAAAAAAAT
AGGTATCAGACCGCGTATCATAGCTATATAACTTTAATGAATCAAGTTAGGAAATTTAAACAAAATGAACAATCTTTTGT
TCAAAGAATCGATATGCTAACTTTTCAACAAGAAGAAATTGGAAATGCAGAGCTATCTATTGGTGAAGAAGAAAAACTGA
TGGAAGAGCGGGAGAAACTTACGAACTATCAGAAAATAGTAGATAGTCTTTCTTATAGTTACCAAGCTATGACAAATGAA
GAAACAAACTCTTTAGACGCGATAGGTTCAGCTAGTCAGGAACTTCAAACAATAGCTTCTTTAGATGCTGACTATGAAAG
CATTTCTGATAATGTTCATAGTGCCTATTATCTTTTGCAAGATGCGGTCAGTGAAATCGGACGTCAATTAGATTTGCTAG
AGTTAGATGAGGAGCGCTTGGATATAGTTAATGAAAGGCTTGAACTAATTCATCAATTGAAAAGAAAGTATGGAGATTCG
ATCGAGATCATTCTAAACTATTATGATCATATTAGTGAAGAACTTTTGGATTCAGACTTCTCTGGAGACAAATTGGAAAG
ATTAGAAAAAGAACTATATGAAAAAGAAAACGAATTAAAACACTTAGCTGAGATGTTACAAGTGGCGCGAAAAAAGATGG
CGAAAGAATTAGAATCAGCAATCCAAAATGAACTGAAGGATTTGTACATGGAGAATGCTCGGTTTGAAGTTAGTTTTAAA
GAGAGCTCTTTTAATGCAGAGGGAGTAGATGAGGTAGAGTTTTACATAACGACTAATCCTGGAGAGCCATTGAAACCTCT
AGTTAAAGTGGCATCAGGAGGAGAAATTTCTCGAGTCATGTTGGCTTTAAAGACCATTTTCTCAAAAACTCAGGGATTAA
CGAGTATTGTTTTTGATGAAGTAGATACTGGAGTGAGTGGGCGAGTCGCCCAAGCGATTGCAGACAAGATTTATCAAATT
GGACTGAATTCACAGGCCTTATGTATCACTCATTTACCTCAAGTAGCCGCTAAAGCCGATCATCAACTATTTATTCGTAA
AGAGATAGTTGATGGAAGGACTTTAACTAAGGTAGAAGAGTTAACTGAAAGGGATCGTATTGACGAAATTGCTCGTATGT
TAGCAGGAGCAGAGATTACAGATTTAACTGTCAAGCATGCAAAAGAATTATTGCAGTTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.496