Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NBY23_RS24425 Genome accession   NZ_CP098195
Coordinates   5020782..5021774 (-) Length   330 a.a.
NCBI ID   WP_000224455.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0098     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5015782..5026774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY23_RS24415 (NBY23_24415) yieP 5018674..5019366 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  NBY23_RS24420 (NBY23_24420) mdtD 5019389..5020816 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  NBY23_RS24425 (NBY23_24425) cytR 5020782..5021774 (-) 993 WP_000224455.1 ribose operon transcriptional repressor RbsR Regulator
  NBY23_RS24430 (NBY23_24430) rbsK 5021778..5022707 (-) 930 WP_001300603.1 ribokinase -
  NBY23_RS24435 (NBY23_24435) rbsB 5022833..5023723 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NBY23_RS24440 (NBY23_24440) rbsC 5023748..5024713 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  NBY23_RS24445 (NBY23_24445) rbsA 5024718..5026223 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  NBY23_RS24450 (NBY23_24450) rbsD 5026231..5026650 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36570.85 Da        Isoelectric Point: 5.2141

>NTDB_id=597710 NBY23_RS24425 WP_000224455.1 5020782..5021774(-) (cytR) [Escherichia coli strain Z0117EC0098]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=597710 NBY23_RS24425 WP_000224455.1 5020782..5021774(-) (cytR) [Escherichia coli strain Z0117EC0098]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364