Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K5P74_RS03285 Genome accession   NZ_CP081846
Coordinates   663795..664517 (-) Length   240 a.a.
NCBI ID   WP_028020175.1    Uniprot ID   A0AAP5NEV2
Organism   Enterococcus raffinosus strain CX012922     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 658795..669517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS03260 (K5P74_03260) - 659097..659657 (+) 561 WP_010746702.1 TetR/AcrR family transcriptional regulator -
  K5P74_RS03265 (K5P74_03265) - 659776..660213 (+) 438 WP_010746701.1 DUF948 domain-containing protein -
  K5P74_RS03270 (K5P74_03270) - 660216..660782 (+) 567 WP_010746700.1 YtxH domain-containing protein -
  K5P74_RS03275 (K5P74_03275) - 661450..662550 (-) 1101 WP_218256782.1 Xaa-Pro peptidase family protein -
  K5P74_RS03280 (K5P74_03280) ccpA 662744..663748 (+) 1005 WP_010746697.1 catabolite control protein A -
  K5P74_RS03285 (K5P74_03285) treR 663795..664517 (-) 723 WP_028020175.1 trehalose operon repressor Regulator
  K5P74_RS03290 (K5P74_03290) treP 664893..666839 (+) 1947 WP_222226491.1 PTS system trehalose-specific EIIBC component -
  K5P74_RS03295 (K5P74_03295) treC 666855..668486 (+) 1632 WP_222226492.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27790.74 Da        Isoelectric Point: 8.0018

>NTDB_id=597700 K5P74_RS03285 WP_028020175.1 663795..664517(-) (treR) [Enterococcus raffinosus strain CX012922]
MKNYEVIYQAIERGILKGVYEAGSYLPSENKLRQTYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYDSSTDVISLKKVMINEKEARVTGFEIGAVCWELIRTRAIDQKKVILDKDLLLTTVVPELDTEIAKDSIY
RYFENQLGLNIAFAEKEITIDALTDEDRELLDLNQHDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=597700 K5P74_RS03285 WP_028020175.1 663795..664517(-) (treR) [Enterococcus raffinosus strain CX012922]
ATGAAAAATTATGAGGTGATTTACCAAGCAATCGAACGAGGAATTTTAAAAGGCGTTTATGAAGCGGGTTCTTATTTACC
TAGTGAAAACAAATTGCGTCAAACCTACCATGTATCACGCGATACGATTCGCAAAGCCTTGTCTCTTCTGATGGCTAATG
GCTACATTCAAAAAATTCAAGGTAAAGGTTCACTTGTTTTGAAGCGAGAGCAGCTGCGATTTCCTGTTTCTGGTTTAACG
AGTTACAAGGAACTCCAAAATTCTTATGGCTATGACAGTAGTACGGACGTTATTAGTTTAAAGAAAGTTATGATTAATGA
AAAGGAAGCACGTGTGACTGGATTTGAAATCGGGGCTGTCTGCTGGGAATTGATTCGTACACGAGCGATCGACCAGAAAA
AAGTAATACTTGATAAAGACCTATTACTGACGACAGTTGTGCCTGAGCTAGATACTGAAATCGCAAAGGATTCCATTTAT
CGCTACTTTGAAAATCAATTAGGGTTGAATATCGCTTTTGCTGAAAAGGAAATCACGATTGATGCCCTGACTGATGAAGA
TCGAGAACTATTGGATCTTAATCAGCATGATATCAATATTGTTTCTGTAAAAAGTCGTGTATTTACTAGTGATGCTCGGC
AATTTCAATACACAGAAAGTCGTCACCAGGTGGATAAATTCCGCTTTTTCGATTTTGCACGACGACACCCTTCAACAATG
TAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.847

98.333

0.5