Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K5P74_RS00515 Genome accession   NZ_CP081846
Coordinates   101226..102173 (-) Length   315 a.a.
NCBI ID   WP_028020408.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain CX012922     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96226..107173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS00490 (K5P74_00490) - 96385..97959 (+) 1575 WP_261321693.1 hypothetical protein -
  K5P74_RS00495 (K5P74_00495) arr 98025..98435 (+) 411 WP_010747320.1 NAD(+)--rifampin ADP-ribosyltransferase -
  K5P74_RS00500 (K5P74_00500) - 98473..99441 (-) 969 WP_222226220.1 siderophore ABC transporter substrate-binding protein -
  K5P74_RS00505 (K5P74_00505) - 99506..100264 (-) 759 WP_222226221.1 ABC transporter ATP-binding protein -
  K5P74_RS00510 (K5P74_00510) - 100261..101229 (-) 969 WP_222226222.1 iron chelate uptake ABC transporter family permease subunit -
  K5P74_RS00515 (K5P74_00515) ceuB 101226..102173 (-) 948 WP_028020408.1 ABC transporter permease Machinery gene
  K5P74_RS00520 (K5P74_00520) - 102441..102641 (-) 201 WP_010747315.1 DUF4177 domain-containing protein -
  K5P74_RS00525 (K5P74_00525) - 102777..103142 (-) 366 WP_222226223.1 MerR family transcriptional regulator -
  K5P74_RS00530 (K5P74_00530) - 103241..103618 (+) 378 WP_222226224.1 carboxymuconolactone decarboxylase family protein -
  K5P74_RS00535 (K5P74_00535) - 103726..104493 (+) 768 WP_010747312.1 SDR family NAD(P)-dependent oxidoreductase -
  K5P74_RS00540 (K5P74_00540) - 104643..106187 (+) 1545 WP_222226225.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34315.42 Da        Isoelectric Point: 10.1435

>NTDB_id=597689 K5P74_RS00515 WP_028020408.1 101226..102173(-) (ceuB) [Enterococcus raffinosus strain CX012922]
MKRKGIILGLLLLSALSLFIGVKELMLQGLLRGDSEQWLILATTRVPRTVSLLLAGATMSICGLIMQHLTQNKFVSPTTA
GTMDSARLGILLVMLFLPNASTSIRTLAAFVFAFLGTLIFLGLSRLLPNKDPIFLPLLGVMFGNIVGSVATFFAYQFQLI
QNMSSWLQGNFSLVAKGSYELLYLTIPLFFIIYLFAYSFTIVGLGEDVAVNLGVNYRLMQMLGIGLVAAASGLVLIMVGT
VPFLGVIVPNIVSLIYGDHVKQNLWITALSGSLFLMACDIISRIVIAPYEVPVSLTVGILGSLIFIYLLVRRRRA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=597689 K5P74_RS00515 WP_028020408.1 101226..102173(-) (ceuB) [Enterococcus raffinosus strain CX012922]
TTGAAAAGAAAAGGAATTATACTTGGTCTACTTTTGTTAAGCGCTCTCTCTTTATTTATCGGAGTCAAAGAGTTGATGCT
GCAGGGGTTGCTTCGAGGCGATTCTGAGCAATGGCTGATCCTAGCCACTACGCGTGTTCCGCGAACCGTCAGCTTGCTTT
TAGCCGGCGCGACAATGAGTATTTGCGGTCTGATTATGCAGCATCTCACACAAAATAAATTTGTTTCACCAACAACAGCG
GGCACGATGGACAGTGCTCGATTGGGGATTTTACTGGTAATGCTTTTTCTGCCAAATGCCTCTACCAGTATTCGAACGCT
TGCCGCCTTTGTTTTTGCTTTTCTCGGAACCTTAATCTTTTTAGGACTAAGCCGGCTGCTTCCAAATAAAGATCCAATAT
TTTTGCCTTTGCTGGGTGTGATGTTCGGCAATATCGTTGGTTCTGTCGCGACCTTTTTTGCTTATCAGTTTCAACTGATC
CAAAATATGTCCTCCTGGCTGCAGGGAAACTTTTCGTTAGTCGCCAAAGGCAGCTATGAGCTGCTCTATCTGACGATTCC
TTTATTTTTCATCATTTATCTATTTGCCTATTCCTTCACAATTGTTGGCTTAGGTGAAGATGTGGCGGTTAATTTAGGTG
TCAATTATCGGTTGATGCAAATGCTTGGGATCGGTTTGGTCGCTGCCGCCAGCGGATTGGTATTGATCATGGTAGGAACA
GTGCCTTTTTTAGGCGTGATCGTTCCAAATATCGTTTCCCTGATCTATGGAGATCATGTAAAGCAAAATCTATGGATTAC
AGCGTTGAGCGGCAGTCTGTTTTTAATGGCCTGCGATATTATTTCCCGCATCGTCATCGCCCCCTATGAAGTGCCTGTCA
GTCTAACAGTGGGGATTTTAGGGAGCCTGATATTTATTTACCTATTGGTTAGGAGGAGACGCGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.316

96.508

0.495