Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K5X77_RS05525 Genome accession   NZ_CP081833
Coordinates   1151097..1152908 (-) Length   603 a.a.
NCBI ID   WP_222316868.1    Uniprot ID   -
Organism   Vagococcus lutrae strain BN31     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1146097..1157908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5X77_RS05495 (K5X77_05495) - 1146333..1147046 (+) 714 WP_023605493.1 uracil-DNA glycosylase -
  K5X77_RS05500 (K5X77_05500) - 1147077..1147586 (-) 510 WP_222316863.1 gamma carbonic anhydrase family protein -
  K5X77_RS05505 (K5X77_05505) - 1147615..1147791 (-) 177 WP_222316864.1 hypothetical protein -
  K5X77_RS05510 (K5X77_05510) - 1147792..1148472 (-) 681 WP_222316865.1 NAD(P)H-dependent oxidoreductase -
  K5X77_RS05515 (K5X77_05515) - 1148498..1149517 (-) 1020 WP_222316866.1 zinc-binding alcohol dehydrogenase family protein -
  K5X77_RS05520 (K5X77_05520) - 1149704..1150999 (+) 1296 WP_222316867.1 ISL3 family transposase -
  K5X77_RS05525 (K5X77_05525) pepF 1151097..1152908 (-) 1812 WP_222316868.1 oligoendopeptidase F Regulator
  K5X77_RS05530 (K5X77_05530) - 1152955..1154148 (-) 1194 WP_222316869.1 competence protein CoiA family protein -
  K5X77_RS05535 (K5X77_05535) - 1154228..1155496 (-) 1269 WP_222316870.1 NCS2 family permease -
  K5X77_RS05545 (K5X77_05545) - 1156060..1157344 (-) 1285 Protein_1062 ISL3 family transposase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69014.63 Da        Isoelectric Point: 4.7738

>NTDB_id=597655 K5X77_RS05525 WP_222316868.1 1151097..1152908(-) (pepF) [Vagococcus lutrae strain BN31]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMESTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAFEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDSEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=597655 K5X77_RS05525 WP_222316868.1 1151097..1152908(-) (pepF) [Vagococcus lutrae strain BN31]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGTTAGAAACGTTGTATGTTTATTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTCCAACCAGAATTATTCGAACTAACAGATGAACAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCACTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAACAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAGTACTGATCCAA
AAGTGCGAGAAGCTGCTTTTAAAGGGCTGTACCAAGTTTATGAACAGTTTCAAAATACATTGGCAACGACGCTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAATCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTGCCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTTTTGAAAAATCAAAAGTCGCATTAAAACCATTAGGGGAAGAATATGGTAAAGTCGTCCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAACCAAGGAAAACGTAGTGGAGCTTATTCATCAGGGGCTTACGATACAGTGC
CTTATATTTTAATGAACTGGCATGATAGTTTAGACCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGTGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAGTTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGTGACTACTTAAACGATTACTATGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATTC
TGAGATTGCTTTAGAGTGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCAATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.975

98.342

0.541