Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K5P22_RS16655 Genome accession   NZ_CP081827
Coordinates   3420693..3421289 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain AR8538     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3415693..3426289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P22_RS16640 helD 3415904..3417958 (-) 2055 WP_102005961.1 DNA helicase IV -
  K5P22_RS16645 - 3418083..3418529 (+) 447 WP_104467271.1 YccF domain-containing protein -
  K5P22_RS16650 yccS 3418547..3420682 (+) 2136 WP_117264707.1 YccS family putative transporter -
  K5P22_RS16655 sxy/tfoX 3420693..3421289 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  K5P22_RS16660 - 3421307..3421612 (-) 306 WP_158238131.1 hypothetical protein -
  K5P22_RS16665 sulA 3421638..3422147 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  K5P22_RS16670 ompA 3422500..3423570 (+) 1071 WP_023289051.1 porin OmpA -
  K5P22_RS16675 matP 3423717..3424169 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  K5P22_RS16680 - 3424355..3426112 (+) 1758 WP_087824568.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=597617 K5P22_RS16655 WP_023289053.1 3420693..3421289(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain AR8538]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=597617 K5P22_RS16655 WP_023289053.1 3420693..3421289(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain AR8538]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCACTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495