Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NBY24_RS09570 Genome accession   NZ_CP098192
Coordinates   1993487..1994914 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0116     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988487..1999914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY24_RS09540 (NBY24_09555) yeeZ 1988542..1989366 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NBY24_RS09545 (NBY24_09560) yeeY 1989412..1990341 (+) 930 WP_000803340.1 LysR substrate-binding domain-containing protein -
  NBY24_RS09550 (NBY24_09565) yoeI 1990556..1990618 (+) 63 WP_106104994.1 membrane protein YoeI -
  NBY24_RS09555 (NBY24_09570) plaP 1990608..1991966 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NBY24_RS09560 (NBY24_09575) tsuA 1992145..1993203 (+) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  NBY24_RS09565 (NBY24_09580) tsuB 1993217..1993444 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NBY24_RS09570 (NBY24_09585) sbcB 1993487..1994914 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  NBY24_RS09575 (NBY24_09590) dacD 1995123..1996289 (+) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NBY24_RS09580 (NBY24_09595) sbmC 1996408..1996881 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  NBY24_RS09585 (NBY24_09600) yeeA 1997079..1998137 (+) 1059 WP_001200890.1 FUSC family protein -
  NBY24_RS09590 (NBY24_09605) tmaR 1998309..1998638 (+) 330 WP_000450409.1 DUF496 family protein -
  NBY24_RS09595 (NBY24_09610) - 1998739..1998873 (-) 135 WP_001297944.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=597586 NBY24_RS09570 WP_000980539.1 1993487..1994914(-) (sbcB) [Escherichia coli strain Z0117EC0116]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=597586 NBY24_RS09570 WP_000980539.1 1993487..1994914(-) (sbcB) [Escherichia coli strain Z0117EC0116]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581