Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K5O10_RS14190 Genome accession   NZ_CP081813
Coordinates   2923725..2924354 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain WW1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2918725..2929354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O10_RS14175 (K5O10_14175) helD 2918967..2921021 (-) 2055 WP_112027214.1 DNA helicase IV -
  K5O10_RS14180 (K5O10_14180) - 2921144..2921590 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K5O10_RS14185 (K5O10_14185) yccS 2921600..2923762 (+) 2163 WP_000875044.1 YccS family putative transporter -
  K5O10_RS14190 (K5O10_14190) sxy/tfoX 2923725..2924354 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K5O10_RS14195 (K5O10_14195) sulA 2924573..2925082 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K5O10_RS14200 (K5O10_14200) ompA 2925439..2926479 (+) 1041 WP_000750416.1 porin OmpA -
  K5O10_RS14205 (K5O10_14205) matP 2926555..2927007 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K5O10_RS14210 (K5O10_14210) - 2927193..2928953 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=597506 K5O10_RS14190 WP_000839153.1 2923725..2924354(-) (sxy/tfoX) [Shigella flexneri strain WW1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=597506 K5O10_RS14190 WP_000839153.1 2923725..2924354(-) (sxy/tfoX) [Shigella flexneri strain WW1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1