Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NBY25_RS06650 Genome accession   NZ_CP098187
Coordinates   1396343..1396948 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Z0117EC0117     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1391343..1401948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY25_RS25770 - 1391897..1391995 (+) 99 Protein_1285 hypothetical protein -
  NBY25_RS06620 (NBY25_06610) rsmS 1392048..1392209 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  NBY25_RS06625 (NBY25_06615) priC 1392223..1392750 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  NBY25_RS06630 (NBY25_06620) ybaN 1392820..1393197 (+) 378 WP_001188900.1 DUF454 family protein -
  NBY25_RS06635 (NBY25_06625) apt 1393350..1393901 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NBY25_RS06640 (NBY25_06630) dnaX 1394030..1395961 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  NBY25_RS06645 (NBY25_06635) ybaB 1396014..1396343 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NBY25_RS06650 (NBY25_06640) recR 1396343..1396948 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NBY25_RS06655 (NBY25_06645) htpG 1397058..1398932 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  NBY25_RS06660 (NBY25_06650) adk 1399113..1399757 (+) 645 WP_001220233.1 adenylate kinase -
  NBY25_RS06665 (NBY25_06655) hemH 1399889..1400851 (+) 963 WP_001250114.1 ferrochelatase -
  NBY25_RS06670 (NBY25_06660) aes 1400826..1401794 (-) 969 WP_000801824.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=597489 NBY25_RS06650 WP_001195025.1 1396343..1396948(+) (recR) [Escherichia coli strain Z0117EC0117]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=597489 NBY25_RS06650 WP_001195025.1 1396343..1396948(+) (recR) [Escherichia coli strain Z0117EC0117]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443