Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6O46_RS15770 Genome accession   NZ_CP081762
Coordinates   3183897..3184526 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CX21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178897..3189526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O46_RS15755 (J6O46_15715) helD 3179139..3181193 (-) 2055 WP_000420536.1 DNA helicase IV -
  J6O46_RS15760 (J6O46_15720) yccF 3181316..3181762 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6O46_RS15765 (J6O46_15725) yccS 3181772..3183934 (+) 2163 WP_000875023.1 YccS family putative transporter -
  J6O46_RS15770 (J6O46_15730) sxy/tfoX 3183897..3184526 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6O46_RS15775 (J6O46_15735) sulA 3184745..3185254 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J6O46_RS15780 (J6O46_15740) ompA 3185611..3186663 (+) 1053 WP_001307702.1 porin OmpA -
  J6O46_RS15785 (J6O46_15745) matP 3186738..3187190 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J6O46_RS15790 (J6O46_15750) ycbZ 3187376..3189136 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=597392 J6O46_RS15770 WP_000839153.1 3183897..3184526(-) (sxy/tfoX) [Escherichia coli strain CX21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=597392 J6O46_RS15770 WP_000839153.1 3183897..3184526(-) (sxy/tfoX) [Escherichia coli strain CX21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1