Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6O52_RS15545 Genome accession   NZ_CP081742
Coordinates   3153515..3154144 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CX15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3148515..3159144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O52_RS15530 (J6O52_15500) helD 3148757..3150811 (-) 2055 WP_000420536.1 DNA helicase IV -
  J6O52_RS15535 (J6O52_15505) yccF 3150934..3151380 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6O52_RS15540 (J6O52_15510) yccS 3151390..3153552 (+) 2163 WP_000875023.1 YccS family putative transporter -
  J6O52_RS15545 (J6O52_15515) sxy/tfoX 3153515..3154144 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6O52_RS15550 (J6O52_15520) sulA 3154363..3154872 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J6O52_RS15555 (J6O52_15525) ompA 3155229..3156281 (+) 1053 WP_001307702.1 porin OmpA -
  J6O52_RS15560 (J6O52_15530) matP 3156356..3156808 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J6O52_RS15565 (J6O52_15535) ycbZ 3156994..3158754 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=597370 J6O52_RS15545 WP_000839153.1 3153515..3154144(-) (sxy/tfoX) [Escherichia coli strain CX15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=597370 J6O52_RS15545 WP_000839153.1 3153515..3154144(-) (sxy/tfoX) [Escherichia coli strain CX15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1