Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J70_RS03545 Genome accession   NZ_AP018774
Coordinates   700331..700945 (+) Length   204 a.a.
NCBI ID   WP_005686751.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 695331..705945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS03515 (CHBNIII3_06750) - 695467..696288 (-) 822 WP_105876685.1 IS3 family transposase -
  K6J70_RS03520 (CHBNIII3_06760) - 696273..696626 (-) 354 WP_005655582.1 helix-turn-helix domain-containing protein -
  K6J70_RS03525 (CHBNIII3_06770) - 696924..698192 (+) 1269 WP_005689509.1 NRAMP family divalent metal transporter -
  K6J70_RS03530 (CHBNIII3_06780) nudB 698294..698749 (+) 456 WP_105891633.1 dihydroneopterin triphosphate diphosphatase -
  K6J70_RS03535 (CHBNIII3_06790) - 698909..699649 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J70_RS03540 (CHBNIII3_06800) ruvC 699696..700268 (+) 573 WP_011961738.1 crossover junction endodeoxyribonuclease RuvC -
  K6J70_RS03545 (CHBNIII3_06810) ruvA 700331..700945 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J70_RS03550 (CHBNIII3_06820) ruvB 700953..701960 (+) 1008 WP_011961739.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J70_RS03555 (CHBNIII3_06830) - 702012..702299 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  K6J70_RS03560 (CHBNIII3_06840) xerD 702472..703365 (-) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  K6J70_RS03565 (CHBNIII3_06850) - 703396..704562 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  K6J70_RS03570 (CHBNIII3_06860) proC 704562..705377 (-) 816 WP_005686744.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=59735 K6J70_RS03545 WP_005686751.1 700331..700945(+) (ruvA) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59735 K6J70_RS03545 WP_005686751.1 700331..700945(+) (ruvA) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment