Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6O38_RS15550 Genome accession   NZ_CP081719
Coordinates   3153517..3154146 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CX05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3148517..3159146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O38_RS15535 (J6O38_15500) helD 3148759..3150813 (-) 2055 WP_000420536.1 DNA helicase IV -
  J6O38_RS15540 (J6O38_15505) yccF 3150936..3151382 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6O38_RS15545 (J6O38_15510) yccS 3151392..3153554 (+) 2163 WP_000875023.1 YccS family putative transporter -
  J6O38_RS15550 (J6O38_15515) sxy/tfoX 3153517..3154146 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6O38_RS15555 (J6O38_15520) sulA 3154365..3154874 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J6O38_RS15560 (J6O38_15525) ompA 3155231..3156283 (+) 1053 WP_001307702.1 porin OmpA -
  J6O38_RS15565 (J6O38_15530) matP 3156358..3156810 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J6O38_RS15570 (J6O38_15535) ycbZ 3156996..3158756 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=597326 J6O38_RS15550 WP_000839153.1 3153517..3154146(-) (sxy/tfoX) [Escherichia coli strain CX05]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=597326 J6O38_RS15550 WP_000839153.1 3153517..3154146(-) (sxy/tfoX) [Escherichia coli strain CX05]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1