Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6N91_RS14530 Genome accession   NZ_CP081698
Coordinates   2984277..2984906 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CT02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2979277..2989906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6N91_RS14515 (J6N91_14495) helD 2979519..2981573 (-) 2055 WP_000420536.1 DNA helicase IV -
  J6N91_RS14520 (J6N91_14500) yccF 2981696..2982142 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6N91_RS14525 (J6N91_14505) yccS 2982152..2984314 (+) 2163 WP_000875061.1 YccS family putative transporter -
  J6N91_RS14530 (J6N91_14510) sxy/tfoX 2984277..2984906 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6N91_RS14535 (J6N91_14515) sulA 2985125..2985634 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J6N91_RS14540 (J6N91_14520) ompA 2985991..2987043 (+) 1053 WP_001307702.1 porin OmpA -
  J6N91_RS14545 (J6N91_14525) matP 2987118..2987570 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J6N91_RS14550 (J6N91_14530) ycbZ 2987756..2989516 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=597216 J6N91_RS14530 WP_000839153.1 2984277..2984906(-) (sxy/tfoX) [Escherichia coli strain CT02]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=597216 J6N91_RS14530 WP_000839153.1 2984277..2984906(-) (sxy/tfoX) [Escherichia coli strain CT02]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1