Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6O16_RS15780 Genome accession   NZ_CP081684
Coordinates   3191682..3192311 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 0H23     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186682..3197311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O16_RS15765 (J6O16_15705) helD 3186924..3188978 (-) 2055 WP_000420536.1 DNA helicase IV -
  J6O16_RS15770 (J6O16_15710) yccF 3189101..3189547 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6O16_RS15775 (J6O16_15715) yccS 3189557..3191719 (+) 2163 WP_000875023.1 YccS family putative transporter -
  J6O16_RS15780 (J6O16_15720) sxy/tfoX 3191682..3192311 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6O16_RS15785 (J6O16_15725) sulA 3192530..3193039 (+) 510 WP_104457493.1 SOS-induced cell division inhibitor SulA -
  J6O16_RS15790 (J6O16_15730) ompA 3193396..3194448 (+) 1053 WP_001307702.1 porin OmpA -
  J6O16_RS15795 (J6O16_15735) matP 3194523..3194975 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J6O16_RS15800 (J6O16_15740) ycbZ 3195161..3196921 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=597171 J6O16_RS15780 WP_000839153.1 3191682..3192311(-) (sxy/tfoX) [Escherichia coli strain 0H23]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=597171 J6O16_RS15780 WP_000839153.1 3191682..3192311(-) (sxy/tfoX) [Escherichia coli strain 0H23]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1