Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   K5J94_RS08735 Genome accession   NZ_CP081502
Coordinates   1869386..1870435 (-) Length   349 a.a.
NCBI ID   WP_159543581.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864386..1875435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS08715 - 1865084..1866562 (-) 1479 WP_159548821.1 sugar ABC transporter ATP-binding protein -
  K5J94_RS08720 rbsD 1866581..1866979 (-) 399 WP_159543587.1 D-ribose pyranase -
  K5J94_RS08725 rbsK 1866954..1867865 (-) 912 WP_221912956.1 ribokinase -
  K5J94_RS08730 - 1867993..1868988 (-) 996 WP_221912958.1 LacI family DNA-binding transcriptional regulator -
  K5J94_RS08735 sepM 1869386..1870435 (-) 1050 WP_159543581.1 SepM family pheromone-processing serine protease Regulator
  K5J94_RS08740 coaD 1870413..1870913 (-) 501 WP_159548830.1 pantetheine-phosphate adenylyltransferase -
  K5J94_RS08745 rsmD 1870903..1871442 (-) 540 WP_221912960.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K5J94_RS08750 arcC 1871917..1872867 (-) 951 WP_159548833.1 carbamate kinase -
  K5J94_RS08755 - 1872881..1874215 (-) 1335 WP_159564376.1 dipeptidase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38283.07 Da        Isoelectric Point: 9.8883

>NTDB_id=597079 K5J94_RS08735 WP_159543581.1 1869386..1870435(-) (sepM) [Streptococcus halichoeri strain Shali_VAS-CPH]
MTFIKRFKWWLATLFGLIALLFFLFFPLPYYVEMPGGAYDIKSVLTVNNEKDKAKGAYQFVAVGLSRASVAQLLYAWMTP
FTEISSAKDTTGGYSDEDYLRINQFFMETSQNEAIYQAFKLAKKPVSLDYLGVYVLDINKKSTFKGILNIADTVTGVNGR
AFKSSKELVDYVSHLQLGSKVSVQFESAGQKESKKGKIIKLENGKNGIGIGLTDHTKVKTATNDHVDFKTEGVGGPSAGL
MFTLAIFDQVNHEDLRKGRTIAGTGTIQPDGKVGDIGGAGLKVVAAAKEGATIFFVPNNPVDPQIKKQDPKAITNYEEAK
RAAKQLKTDMKIIPVTSVQDAISYLRKTS

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=597079 K5J94_RS08735 WP_159543581.1 1869386..1870435(-) (sepM) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGACTTTTATAAAACGCTTTAAATGGTGGTTGGCAACGCTTTTTGGCTTGATTGCCTTACTCTTTTTTCTTTTTTTCCC
TCTGCCTTACTATGTAGAGATGCCAGGGGGTGCCTATGATATAAAATCGGTGTTAACAGTTAACAATGAAAAAGATAAGG
CTAAAGGAGCTTACCAATTTGTAGCTGTTGGCCTGAGTCGGGCGTCTGTGGCCCAGCTCTTGTATGCTTGGATGACCCCT
TTTACCGAAATTTCGTCTGCTAAAGACACAACGGGCGGCTATAGTGATGAAGATTATCTGCGGATTAACCAATTTTTTAT
GGAAACTTCTCAAAATGAGGCTATTTATCAGGCCTTCAAATTGGCTAAAAAGCCGGTATCGCTCGATTACCTAGGCGTCT
ATGTTCTTGACATCAATAAAAAATCAACATTTAAGGGGATTTTAAATATTGCCGATACAGTGACTGGGGTCAATGGCCGT
GCTTTTAAGAGTTCTAAAGAGTTAGTGGATTATGTTTCTCATTTACAGTTGGGTTCAAAGGTCAGCGTTCAGTTTGAATC
AGCGGGGCAAAAAGAATCCAAAAAAGGAAAAATTATCAAACTTGAAAATGGAAAAAATGGTATTGGTATTGGCCTGACAG
ACCATACTAAAGTAAAAACAGCAACCAATGATCATGTTGACTTTAAGACTGAAGGAGTAGGAGGACCTAGTGCAGGCCTC
ATGTTTACCCTTGCCATCTTTGATCAGGTGAACCATGAGGATTTACGCAAAGGAAGAACAATTGCTGGCACAGGAACGAT
TCAGCCCGATGGTAAAGTTGGAGATATTGGTGGTGCTGGTTTGAAAGTAGTAGCAGCAGCTAAAGAAGGGGCAACCATTT
TCTTTGTTCCGAATAATCCTGTTGATCCCCAGATTAAAAAGCAAGACCCTAAAGCAATAACCAATTACGAAGAAGCTAAA
CGAGCTGCTAAGCAATTAAAGACGGATATGAAAATTATTCCTGTTACAAGTGTGCAAGATGCGATAAGCTACCTTCGTAA
GACCTCTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-190)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(234-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

67.055

98.281

0.659