Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K5J94_RS08375 Genome accession   NZ_CP081502
Coordinates   1788451..1790253 (-) Length   600 a.a.
NCBI ID   WP_221912912.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783451..1795253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS08355 prsA 1784644..1785591 (-) 948 WP_159543721.1 peptidylprolyl isomerase PrsA -
  K5J94_RS08360 - 1785662..1786363 (-) 702 WP_159563994.1 O-methyltransferase -
  K5J94_RS08365 - 1786406..1787626 (-) 1221 WP_159563993.1 OFA family MFS transporter -
  K5J94_RS08370 - 1787785..1788399 (-) 615 WP_221912910.1 HAD-IA family hydrolase -
  K5J94_RS08375 pepF 1788451..1790253 (-) 1803 WP_221912912.1 oligoendopeptidase F Regulator
  K5J94_RS08380 - 1790263..1791216 (-) 954 WP_159563990.1 competence protein CoiA -
  K5J94_RS08385 - 1791294..1792439 (-) 1146 WP_159563989.1 MFS transporter -
  K5J94_RS08390 - 1792517..1793233 (-) 717 WP_159583241.1 pseudouridine synthase -
  K5J94_RS08395 nagB 1793300..1794004 (-) 705 WP_159563987.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69118.33 Da        Isoelectric Point: 4.9400

>NTDB_id=597076 K5J94_RS08375 WP_221912912.1 1788451..1790253(-) (pepF) [Streptococcus halichoeri strain Shali_VAS-CPH]
MSDNRSHLEEKYTWDLGTIFASDDDWEQEVQALNAALDQAKSDAGHLLDSSSQLLRITQTQLALSRRIETVYVYAHMKND
QDTTVAKYQEYQSKAAALYARFGEVYSFYEPEIMALDEETLIDFEVQEAGLKPYRHYFERLLKNKKHVLTPHEEELLAGA
QEIFNAPEDTFGILDNADISFPTIVDDQGQEVEITHGNFIKLMESKDRKVRQAAFEALYQTYEQFQHTYAKTLQSNVKVH
NFQARVHHYDSARQAAMSANFIPEAVYDTLLASVHKHLPLLHRYLKLRQEVLGLSELKMYDIYTPLSEVDLAVSYDEALA
KTEKILEVFGPDYAKRVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDSMYTLIHETGHSMHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTEALLKEVTDDKERFAILNHYLDGFRGTVFRQTQFAEFELAIHQADQAGQVLTSDY
LNNLYATLNEKYYGLPKAENHYIQYEWARIPHFYYNYYVYQYATGFAAASYLAHKIVHGQPEDIERYLDYLKAGNSDFPL
AVIAKAGVDMTDTTYLDEAFAVFEKRLTELEALVAKGVLH

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=597076 K5J94_RS08375 WP_221912912.1 1788451..1790253(-) (pepF) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGTCAGATAATCGCAGCCATTTAGAAGAAAAATATACGTGGGATTTAGGGACCATCTTTGCCAGTGATGATGATTGGGA
GCAGGAGGTGCAAGCTCTTAATGCCGCACTTGATCAGGCTAAGAGTGATGCCGGACACTTGCTAGATAGTAGTAGTCAGT
TATTACGCATTACCCAGACCCAACTGGCCTTATCACGCCGGATTGAGACAGTATATGTGTATGCGCACATGAAAAATGAC
CAAGATACAACTGTGGCTAAATATCAGGAATATCAGTCCAAGGCTGCAGCTTTATATGCCCGCTTTGGAGAAGTTTATTC
CTTCTATGAACCAGAGATTATGGCTTTAGATGAAGAGACTTTGATTGACTTTGAGGTTCAAGAAGCTGGCCTAAAGCCCT
ATCGTCATTATTTTGAGCGTCTGCTTAAGAATAAAAAACATGTATTGACGCCGCATGAAGAAGAGCTCTTAGCTGGGGCA
CAGGAAATTTTCAATGCTCCTGAGGATACCTTTGGCATTCTAGATAATGCTGATATTTCGTTCCCAACGATTGTAGATGA
TCAAGGCCAAGAAGTGGAAATAACGCATGGTAATTTTATCAAACTGATGGAATCAAAAGACCGTAAAGTCCGGCAAGCTG
CTTTTGAGGCTCTCTATCAAACCTATGAACAATTCCAGCATACTTATGCAAAAACCTTACAAAGCAATGTGAAAGTCCAT
AATTTCCAAGCACGTGTTCACCACTATGATTCAGCGCGTCAAGCAGCTATGTCTGCTAATTTTATTCCAGAAGCTGTCTA
CGATACGCTACTTGCCTCTGTTCATAAGCATCTGCCTCTTTTGCATCGCTACCTTAAGTTACGGCAGGAGGTTCTAGGAC
TTTCAGAATTAAAAATGTATGACATTTATACCCCTTTGTCGGAGGTGGACCTGGCCGTATCTTATGATGAAGCACTGGCC
AAAACAGAAAAAATCTTAGAGGTCTTTGGTCCTGATTATGCCAAGCGAGTGCACCGTGCCTTTACTGAGCGTTGGATTGA
TGTTCATGTCAACAAAGGGAAACGTTCAGGCGCCTATTCTGGTGGTGCTTATGACACCAATGCCTTTATGCTGTTGAACT
GGCAAGATACATTAGATAGTATGTATACCCTAATCCACGAGACAGGTCACAGCATGCACTCAACCTTTACCAGGGAAACG
CAACCTTATGTCTATGGTGATTATAGTATCTTTTTAGCCGAGATTGCCTCAACAACTAATGAAAATATTTTGACAGAAGC
TCTCCTTAAGGAAGTGACTGACGATAAAGAGCGTTTTGCGATTCTAAATCACTATCTTGATGGCTTTAGGGGGACCGTTT
TCCGCCAAACACAGTTTGCGGAATTTGAATTAGCAATTCACCAAGCTGATCAGGCTGGCCAGGTGTTAACCAGTGATTAT
CTAAACAACCTCTACGCCACCTTAAACGAAAAGTATTATGGCTTACCAAAAGCCGAAAATCACTACATTCAATATGAGTG
GGCACGTATTCCGCATTTTTATTATAACTATTATGTCTACCAATATGCTACTGGTTTTGCTGCGGCCAGCTACCTAGCGC
ACAAGATTGTCCATGGTCAGCCAGAAGATATTGAGCGTTACTTGGATTACTTGAAAGCGGGTAACTCAGATTTCCCACTA
GCAGTTATCGCCAAAGCAGGTGTTGATATGACAGATACGACTTATCTAGATGAGGCCTTTGCTGTCTTTGAAAAACGTTT
AACAGAATTAGAAGCACTAGTGGCAAAAGGCGTATTACATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.07

99.667

0.708