Detailed information NTG0597072

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: K5J94_RS06440
• Genome accession: NZ_CP081502
• Coordinates: 1348408..1349634 (+)
• Length: 408 a.a.
• NCBI ID: WP_159543831.1
• Uniprot ID: -
• Organism: Streptococcus halichoeri strain Shali_VAS-CPH
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1343408..1354634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5J94_RS06415	-	1343461..1343907 (-)	447	WP_159543840.1	DUF1836 domain-containing protein	-
K5J94_RS06420	-	1344122..1345390 (-)	1269	WP_221913792.1	hydroxymethylglutaryl-CoA reductase, degradative	-
K5J94_RS06425	-	1345392..1346567 (-)	1176	WP_159564303.1	hydroxymethylglutaryl-CoA synthase	-
K5J94_RS06430	-	1346762..1347601 (+)	840	WP_159559686.1	thymidylate synthase	-
K5J94_RS06435	-	1347690..1348187 (+)	498	WP_221912655.1	dihydrofolate reductase	-
K5J94_RS06440	clpX	1348408..1349634 (+)	1227	WP_159543831.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
K5J94_RS06445	yihA	1349648..1350244 (+)	597	WP_159559603.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
K5J94_RS06450	-	1350278..1350964 (-)	687	WP_331461840.1	YoaK family protein	-
K5J94_RS06455	-	1351425..1353533 (-)	2109	WP_221912656.1	AAA family ATPase	-
K5J94_RS06460	rplJ	1353958..1354458 (+)	501	WP_159543824.1	50S ribosomal protein L10	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 44877.56 Da
• Isoelectric Point: 4.5921

>NTDB_id=597072 K5J94_RS06440 WP_159543831.1 1348408..1349634(+) (clpX) [Streptococcus halichoeri strain Shali_VAS-CPH]
MAVNRTTEVKVHCSFCGKSQDEVKKMIAGNNVFICNECVELSQEIIKEELADEVLADLAETPKPKELLATLDQYVVGQER
AKRALAVAVYNHYKRVSFPESQDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRKLDDKASYMQEIISEDIQKFGLIPEFIGRLPVIAALEQLTTTDLIKIL
TEPKNALVKQYQALLSYDGVELEFETQALEAIAKKAIARKTGARGLRSIIEETMLDIMFEIPSQEDAVKVIITKAAVDGS
EKPILETA

Nucleotide

• Length: 1227 bp

>NTDB_id=597072 K5J94_RS06440 WP_159543831.1 1348408..1349634(+) (clpX) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGGCAGTAAATCGAACAACAGAAGTAAAGGTTCATTGCTCATTCTGTGGAAAAAGCCAAGATGAGGTTAAAAAAATGAT
TGCAGGTAACAATGTCTTTATCTGTAATGAGTGTGTCGAGTTATCCCAGGAAATTATCAAAGAAGAACTAGCGGACGAAG
TTTTAGCGGATTTAGCAGAAACACCTAAGCCTAAAGAACTCCTAGCCACTTTGGACCAATACGTGGTTGGGCAAGAACGA
GCAAAGCGCGCCTTAGCAGTCGCTGTTTATAACCATTATAAGCGTGTTTCCTTTCCTGAAAGTCAAGATGAAGATGTCGA
ATTGCAAAAATCAAACATCTTAATGATCGGACCAACGGGGTCTGGTAAGACCTTCCTAGCTCAAACTCTAGCTAAAAGCT
TAAACGTCCCTTTTGCTATTGCTGATGCCACATCATTGACTGAAGCAGGTTATGTGGGAGAAGATGTGGAGAATATTTTA
CTCAAATTGATCCAAGCTGCTGATTACAATGTAGAACGAGCTGAACGTGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCTAAAAAAGGTGAGAATGTATCAATTACCCGGGATGTCTCTGGCGAAGGAGTGCAGCAAGCCCTGCTCAAAATTATTG
AGGGAACGGTTGCTAGTGTCCCACCACAAGGTGGACGTAAGCATCCTAACCAAGAGATGATTCAGATTGATACCAAAAAT
ATTTTATTCATTGTTGGTGGTGCTTTTGATGGTATCGAAGAGATTGTCAAGCAGCGCCTTGGTGAAAAGATCATTGGTTT
TGGCCAAAACAACCGAAAACTTGATGATAAGGCTTCTTATATGCAAGAAATCATTTCAGAGGATATTCAAAAATTCGGCC
TTATTCCTGAATTTATCGGTCGCTTACCGGTTATTGCTGCGCTTGAGCAGTTGACAACCACTGATCTGATTAAAATATTA
ACAGAACCAAAAAATGCTTTGGTGAAGCAATACCAAGCTCTATTGTCTTATGATGGTGTTGAATTAGAATTTGAAACCCA
AGCCCTAGAAGCTATTGCCAAAAAAGCCATCGCACGTAAAACTGGCGCTAGAGGGCTTCGCTCTATTATCGAAGAAACCA
TGCTTGATATTATGTTTGAAATTCCAAGCCAAGAAGATGCCGTGAAAGTCATTATTACCAAAGCAGCTGTAGATGGTTCT
GAAAAACCCATTTTAGAAACAGCTTGA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-387)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.509	100	0.887
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58	98.039	0.569