Detailed information
Bioinformatically predicted
Overview
| Name | amiF | Type | Regulator |
| Locus tag | K5J94_RS03365 | Genome accession | NZ_CP081502 |
| Coordinates | 676586..677518 (+) | Length | 310 a.a. |
| NCBI ID | WP_159565000.1 | Uniprot ID | - |
| Organism | Streptococcus halichoeri strain Shali_VAS-CPH | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 620893..678299 | 676586..677518 | within | 0 |
Gene organization within MGE regions
Location: 620893..678299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5J94_RS03085 | - | 620993..621256 (+) | 264 | WP_002311901.1 | peptide-binding protein | - |
| K5J94_RS03090 | - | 621277..621360 (+) | 84 | WP_001814874.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| K5J94_RS03095 | erm(B) | 621485..622222 (+) | 738 | WP_010725603.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | - |
| K5J94_RS03100 | - | 622392..622652 (+) | 261 | Protein_560 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| K5J94_RS03105 | - | 622815..623480 (+) | 666 | Protein_561 | IS1182-like element IS1182 family transposase | - |
| K5J94_RS03110 | - | 623516..623761 (+) | 246 | WP_000567888.1 | single-stranded DNA-binding protein | - |
| K5J94_RS03115 | - | 623864..624733 (+) | 870 | WP_000228166.1 | nucleotidyltransferase domain-containing protein | - |
| K5J94_RS03120 | - | 624714..625448 (+) | 735 | WP_000662263.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| K5J94_RS03125 | - | 625481..626344 (+) | 864 | WP_002294505.1 | aminoglycoside nucleotidyltransferase ANT(6)-Ia | - |
| K5J94_RS03130 | - | 626388..626915 (+) | 528 | WP_002294507.1 | phosphoribosyltransferase family protein | - |
| K5J94_RS03135 | - | 627047..627856 (+) | 810 | WP_002294509.1 | ANT(9) family aminoglycoside nucleotidyltransferase Spw | - |
| K5J94_RS03140 | - | 628035..628325 (+) | 291 | WP_010733534.1 | hypothetical protein | - |
| K5J94_RS03145 | - | 628376..628834 (-) | 459 | WP_002325145.1 | hypothetical protein | - |
| K5J94_RS03150 | - | 628902..629480 (+) | 579 | WP_088186203.1 | recombinase zinc beta ribbon domain-containing protein | - |
| K5J94_RS03155 | lsa(E) | 629923..631407 (+) | 1485 | WP_002294513.1 | ABC-F type ribosomal protection protein Lsa(E) | - |
| K5J94_RS03160 | lnu(B) | 631461..632264 (+) | 804 | WP_002294514.1 | lincosamide nucleotidyltransferase Lnu(B) | - |
| K5J94_RS03165 | - | 633045..633773 (+) | 729 | Protein_573 | recombinase zinc beta ribbon domain-containing protein | - |
| K5J94_RS03170 | - | 633916..634140 (+) | 225 | WP_000205227.1 | helix-turn-helix transcriptional regulator | - |
| K5J94_RS03175 | - | 634155..634550 (+) | 396 | Protein_575 | nucleotidyltransferase domain-containing protein | - |
| K5J94_RS03180 | - | 634625..635305 (+) | 681 | WP_001015311.1 | IS6-like element IS1216 family transposase | - |
| K5J94_RS03185 | - | 635478..636830 (+) | 1353 | WP_074626891.1 | ISLre2 family transposase | - |
| K5J94_RS03190 | rpmH | 637257..637391 (+) | 135 | WP_000831903.1 | 50S ribosomal protein L34 | - |
| K5J94_RS03195 | - | 637960..638403 (-) | 444 | WP_159543286.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| K5J94_RS03200 | - | 638548..640191 (+) | 1644 | WP_159564408.1 | alpha-keto acid decarboxylase family protein | - |
| K5J94_RS09495 | - | 640548..642200 (-) | 1653 | WP_231700371.1 | helix-turn-helix domain-containing protein | - |
| K5J94_RS03215 | argF | 642320..643258 (+) | 939 | WP_159543282.1 | ornithine carbamoyltransferase | - |
| K5J94_RS03220 | - | 643302..644807 (+) | 1506 | WP_159543280.1 | YfcC family protein | - |
| K5J94_RS03225 | - | 644820..645680 (+) | 861 | WP_159543496.1 | dimethylarginine dimethylaminohydrolase family protein | - |
| K5J94_RS03230 | - | 645698..646678 (+) | 981 | WP_159564406.1 | NAD(P)-dependent oxidoreductase | - |
| K5J94_RS03235 | - | 646920..647693 (+) | 774 | WP_159548592.1 | TatD family hydrolase | - |
| K5J94_RS03240 | rnmV | 647686..648255 (+) | 570 | WP_221913502.1 | ribonuclease M5 | - |
| K5J94_RS03245 | rsmA | 648535..649407 (+) | 873 | WP_159543274.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| K5J94_RS09605 | - | 649700..651196 (+) | 1497 | WP_269437387.1 | LPXTG cell wall anchor domain-containing protein | - |
| K5J94_RS03255 | - | 651319..652038 (-) | 720 | WP_221913504.1 | DUF4811 domain-containing protein | - |
| K5J94_RS03260 | - | 652040..653539 (-) | 1500 | WP_221913505.1 | MDR family MFS transporter | - |
| K5J94_RS03265 | - | 653745..654140 (+) | 396 | WP_221913507.1 | hypothetical protein | - |
| K5J94_RS03270 | rsgA | 654357..655229 (+) | 873 | WP_221913509.1 | ribosome small subunit-dependent GTPase A | - |
| K5J94_RS03275 | rpe | 655238..655900 (+) | 663 | WP_159548529.1 | ribulose-phosphate 3-epimerase | - |
| K5J94_RS03280 | - | 655893..656525 (+) | 633 | WP_221913511.1 | thiamine diphosphokinase | - |
| K5J94_RS03285 | - | 656593..657798 (+) | 1206 | WP_408022839.1 | DNA recombination protein RmuC | - |
| K5J94_RS03290 | - | 657788..658726 (+) | 939 | WP_221913515.1 | 3'-5' exoribonuclease YhaM family protein | - |
| K5J94_RS03295 | purR | 658837..659649 (+) | 813 | WP_159564384.1 | pur operon repressor | - |
| K5J94_RS03300 | - | 659673..662327 (+) | 2655 | WP_221913517.1 | SEC10/PgrA surface exclusion domain-containing protein | - |
| K5J94_RS03305 | rpsL | 662500..662913 (+) | 414 | WP_159543253.1 | 30S ribosomal protein S12 | - |
| K5J94_RS03310 | rpsG | 662934..663404 (+) | 471 | WP_159543251.1 | 30S ribosomal protein S7 | - |
| K5J94_RS03315 | fusA | 663792..665870 (+) | 2079 | WP_159543249.1 | elongation factor G | - |
| K5J94_RS03320 | gap | 666149..667162 (+) | 1014 | WP_159543247.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| K5J94_RS03325 | - | 667735..668931 (+) | 1197 | WP_159564984.1 | phosphoglycerate kinase | - |
| K5J94_RS03330 | - | 669260..669772 (+) | 513 | WP_159564986.1 | aromatic acid exporter family protein | - |
| K5J94_RS03335 | - | 669850..670221 (+) | 372 | WP_159548541.1 | MerR family transcriptional regulator | - |
| K5J94_RS03340 | - | 670257..671603 (+) | 1347 | WP_221913519.1 | glutamine synthetase family protein | - |
| K5J94_RS03345 | - | 671838..673493 (+) | 1656 | WP_159543238.1 | peptide ABC transporter substrate-binding protein | - |
| K5J94_RS03350 | - | 673572..674486 (+) | 915 | WP_159543236.1 | ABC transporter permease | - |
| K5J94_RS03355 | - | 674496..675527 (+) | 1032 | WP_159543234.1 | ABC transporter permease | - |
| K5J94_RS03360 | oppD | 675540..676586 (+) | 1047 | WP_159564990.1 | ABC transporter ATP-binding protein | Regulator |
| K5J94_RS03365 | amiF | 676586..677518 (+) | 933 | WP_159565000.1 | ABC transporter ATP-binding protein | Regulator |
| K5J94_RS03370 | - | 677760..677997 (+) | 238 | Protein_613 | Blp family class II bacteriocin | - |
| K5J94_RS03375 | - | 678052..678258 (+) | 207 | WP_221913522.1 | bacteriocin | - |
Sequence
Protein
Download Length: 310 a.a. Molecular weight: 35046.17 Da Isoelectric Point: 7.0889
>NTDB_id=597049 K5J94_RS03365 WP_159565000.1 676586..677518(+) (amiF) [Streptococcus halichoeri strain Shali_VAS-CPH]
MRDEGKKLVQLKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISEGEIIFNGESISHL
KGKALHDFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLTKNKAEREARVQELLDLVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPRFIIADEPISALDVSIQAQVVNLMQKLQHERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTAED
VYNHPIHPYTKSLLSAIPEPDPAKERLRTADIYDPSQELDGQEREMREITPGHFVLSTEEEAMTYKTRIL
MRDEGKKLVQLKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISEGEIIFNGESISHL
KGKALHDFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLTKNKAEREARVQELLDLVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPRFIIADEPISALDVSIQAQVVNLMQKLQHERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTAED
VYNHPIHPYTKSLLSAIPEPDPAKERLRTADIYDPSQELDGQEREMREITPGHFVLSTEEEAMTYKTRIL
Nucleotide
Download Length: 933 bp
>NTDB_id=597049 K5J94_RS03365 WP_159565000.1 676586..677518(+) (amiF) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGCGTGATGAAGGCAAGAAATTAGTCCAACTAAAGAATGTGTCGCTAACCTTTAATAAGGGCAAGAAAAACGAAGTCAA
AGCTATTGATAATGTTAGTTTTGATATCTATGAAGGGGAAGTCTTTGGCCTTGTGGGAGAGTCAGGCTCTGGTAAGACCA
CTGTGGGCCGTGCTATTTTGAAATTGTATGATATTAGTGAGGGGGAAATCATTTTTAATGGCGAGTCTATTTCTCACTTA
AAAGGCAAAGCCTTACATGATTTTCGAAAAAATGCCCAGATGATTTTTCAAGATCCGCAAGCCAGTTTAAATGGTCGGAT
GAAAATTCGCGATATTGTCGCTGAAGGTTTGGACATTCATAAATTAACTAAGAATAAGGCTGAGCGTGAAGCACGAGTCC
AAGAATTACTTGACTTGGTTGGTTTGAATAAGGACCATGTTACCCGTTATCCACATGAATTTTCCGGTGGTCAACGCCAA
CGGATTGGCATTGCTCGCGCCCTAGCGGTTAAACCAAGATTTATCATTGCGGACGAACCGATTTCAGCATTAGATGTATC
CATTCAGGCGCAGGTGGTTAACTTGATGCAAAAATTGCAGCATGAACGTGGCTTAACCTATCTCTTTATTGCGCATGACC
TTTCCATGGTCAAATACATTTCTGATCGCATTGGGGTCATGCATTGGGGGAAGATGCTGGAAATTGGCACCGCAGAAGAT
GTCTATAATCACCCGATTCATCCGTATACGAAGAGCTTACTCTCAGCGATCCCAGAGCCTGATCCAGCAAAAGAGCGGCT
GCGGACAGCAGACATTTACGACCCAAGCCAAGAGCTGGATGGCCAAGAACGCGAAATGCGTGAGATTACACCAGGGCACT
TTGTCTTATCTACCGAAGAAGAAGCCATGACTTATAAAACCCGTATTCTCTAA
ATGCGTGATGAAGGCAAGAAATTAGTCCAACTAAAGAATGTGTCGCTAACCTTTAATAAGGGCAAGAAAAACGAAGTCAA
AGCTATTGATAATGTTAGTTTTGATATCTATGAAGGGGAAGTCTTTGGCCTTGTGGGAGAGTCAGGCTCTGGTAAGACCA
CTGTGGGCCGTGCTATTTTGAAATTGTATGATATTAGTGAGGGGGAAATCATTTTTAATGGCGAGTCTATTTCTCACTTA
AAAGGCAAAGCCTTACATGATTTTCGAAAAAATGCCCAGATGATTTTTCAAGATCCGCAAGCCAGTTTAAATGGTCGGAT
GAAAATTCGCGATATTGTCGCTGAAGGTTTGGACATTCATAAATTAACTAAGAATAAGGCTGAGCGTGAAGCACGAGTCC
AAGAATTACTTGACTTGGTTGGTTTGAATAAGGACCATGTTACCCGTTATCCACATGAATTTTCCGGTGGTCAACGCCAA
CGGATTGGCATTGCTCGCGCCCTAGCGGTTAAACCAAGATTTATCATTGCGGACGAACCGATTTCAGCATTAGATGTATC
CATTCAGGCGCAGGTGGTTAACTTGATGCAAAAATTGCAGCATGAACGTGGCTTAACCTATCTCTTTATTGCGCATGACC
TTTCCATGGTCAAATACATTTCTGATCGCATTGGGGTCATGCATTGGGGGAAGATGCTGGAAATTGGCACCGCAGAAGAT
GTCTATAATCACCCGATTCATCCGTATACGAAGAGCTTACTCTCAGCGATCCCAGAGCCTGATCCAGCAAAAGAGCGGCT
GCGGACAGCAGACATTTACGACCCAAGCCAAGAGCTGGATGGCCAAGAACGCGAAATGCGTGAGATTACACCAGGGCACT
TTGTCTTATCTACCGAAGAAGAAGCCATGACTTATAAAACCCGTATTCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiF | Streptococcus thermophilus LMD-9 |
55.446 |
97.742 |
0.542 |
| amiF | Streptococcus thermophilus LMG 18311 |
55.116 |
97.742 |
0.539 |
| amiF | Streptococcus salivarius strain HSISS4 |
54.785 |
97.742 |
0.535 |
| oppD | Streptococcus mutans UA159 |
39.437 |
91.613 |
0.361 |