Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | K5J94_RS02470 | Genome accession | NZ_CP081502 |
| Coordinates | 476135..478576 (+) | Length | 813 a.a. |
| NCBI ID | WP_221913394.1 | Uniprot ID | - |
| Organism | Streptococcus halichoeri strain Shali_VAS-CPH | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 468520..481034 | 476135..478576 | within | 0 |
Gene organization within MGE regions
Location: 468520..481034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5J94_RS02435 | - | 468526..468729 (+) | 204 | WP_159543468.1 | cold-shock protein | - |
| K5J94_RS02440 | - | 469369..470952 (-) | 1584 | WP_221913390.1 | LPXTG cell wall anchor domain-containing protein | - |
| K5J94_RS02445 | - | 471304..472092 (-) | 789 | WP_159543462.1 | DUF1828 domain-containing protein | - |
| K5J94_RS02450 | - | 472085..472552 (-) | 468 | WP_159543460.1 | DUF6978 family protein | - |
| K5J94_RS02455 | - | 472948..473133 (-) | 186 | WP_159543458.1 | hypothetical protein | - |
| K5J94_RS02460 | - | 473597..475324 (-) | 1728 | WP_221913391.1 | LPXTG cell wall anchor domain-containing protein | - |
| K5J94_RS02465 | - | 475674..476135 (+) | 462 | WP_159543454.1 | CtsR family transcriptional regulator | - |
| K5J94_RS02470 | clpC | 476135..478576 (+) | 2442 | WP_221913394.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| K5J94_RS02475 | groES | 479009..479293 (+) | 285 | WP_159563890.1 | co-chaperone GroES | - |
| K5J94_RS02480 | groL | 479400..481034 (+) | 1635 | WP_159543448.1 | chaperonin GroEL | - |
Sequence
Protein
Download Length: 813 a.a. Molecular weight: 89628.30 Da Isoelectric Point: 6.9032
>NTDB_id=597045 K5J94_RS02470 WP_221913394.1 476135..478576(+) (clpC) [Streptococcus halichoeri strain Shali_VAS-CPH]
MVDYSKKMRDIFQQAQYQAARYDSQFLETWHILLAMVKVENSLAGLVFSEFEHSIPMEEYEAAAILAMGKSPKEEVTKVP
LRLQSRGLEAILAFAATIQEVTGAKDVGSEHVLFAMLLNPDVLACRVLELAGFKLKDDGKGAFRLADLRRALEMHAGYSK
ATIKAIHDLRKPKKAKAGGFSEMMKPQATGDLSDFTRDLTELARQGKLEPVIGREAEVSRMVQILSRKTKNNPVLVGDAG
VGKTALAYGLAQRIVAGTTTYELREMRVLELDMMSVVAGTRFRGDFEERMNQIIADIEADGKIILFVDELHTIMGSGSGI
DSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIDEPSEADATEILMGLKSTYETFHHVTIARET
VETAVKMAHRYLTSKHLPDSAIDLLDEASATVQGLVQKEVPKDLTPADQALIAGDMKRVSKLLKQTQDESEPKAVAVTPD
HILTTLSKLSGIPVEKLSRADSQKYLRLEKELHQRVIGQEQAVSVIARAIRRNQSGIRTGKRPIGSFMFLGPTGVGKTEL
AKALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNVLLQVL
DDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAVSQDHKAMESRIMEELKRTYRPEFINRIDEKVVFHSL
SQANIKDIVKIMVKPLVAVLAEKGVTLKLQPSVLNHLATIGYDAENGARPLRRAIQTTIEDPLSELILAGKLSAGQTLKV
GLKQQEVTFDSVS
MVDYSKKMRDIFQQAQYQAARYDSQFLETWHILLAMVKVENSLAGLVFSEFEHSIPMEEYEAAAILAMGKSPKEEVTKVP
LRLQSRGLEAILAFAATIQEVTGAKDVGSEHVLFAMLLNPDVLACRVLELAGFKLKDDGKGAFRLADLRRALEMHAGYSK
ATIKAIHDLRKPKKAKAGGFSEMMKPQATGDLSDFTRDLTELARQGKLEPVIGREAEVSRMVQILSRKTKNNPVLVGDAG
VGKTALAYGLAQRIVAGTTTYELREMRVLELDMMSVVAGTRFRGDFEERMNQIIADIEADGKIILFVDELHTIMGSGSGI
DSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIDEPSEADATEILMGLKSTYETFHHVTIARET
VETAVKMAHRYLTSKHLPDSAIDLLDEASATVQGLVQKEVPKDLTPADQALIAGDMKRVSKLLKQTQDESEPKAVAVTPD
HILTTLSKLSGIPVEKLSRADSQKYLRLEKELHQRVIGQEQAVSVIARAIRRNQSGIRTGKRPIGSFMFLGPTGVGKTEL
AKALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNVLLQVL
DDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAVSQDHKAMESRIMEELKRTYRPEFINRIDEKVVFHSL
SQANIKDIVKIMVKPLVAVLAEKGVTLKLQPSVLNHLATIGYDAENGARPLRRAIQTTIEDPLSELILAGKLSAGQTLKV
GLKQQEVTFDSVS
Nucleotide
Download Length: 2442 bp
>NTDB_id=597045 K5J94_RS02470 WP_221913394.1 476135..478576(+) (clpC) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGGTTGACTACTCTAAAAAGATGCGAGACATCTTTCAACAAGCGCAGTACCAAGCTGCGCGTTACGACAGCCAATTCTT
AGAGACTTGGCACATTCTTTTAGCAATGGTCAAGGTAGAAAATTCTTTGGCTGGCCTGGTGTTTAGTGAATTTGAGCATA
GTATTCCGATGGAAGAATACGAAGCGGCAGCGATTTTAGCTATGGGTAAAAGCCCTAAGGAAGAGGTAACTAAGGTGCCG
TTGCGTCTGCAATCACGGGGATTGGAGGCGATTTTAGCTTTTGCGGCAACGATTCAAGAGGTGACCGGAGCTAAGGATGT
GGGGTCAGAGCATGTGCTTTTTGCGATGCTTTTGAATCCTGATGTTTTGGCGTGCCGTGTGCTAGAATTGGCGGGCTTTA
AGCTCAAGGACGACGGCAAGGGTGCTTTTCGTTTGGCGGATTTGCGTCGGGCGCTTGAGATGCATGCGGGTTATTCAAAG
GCGACTATTAAGGCCATCCATGATCTGCGTAAGCCCAAAAAAGCCAAGGCTGGTGGTTTTTCAGAGATGATGAAACCACA
AGCGACAGGGGACTTGTCTGATTTTACGCGCGATTTGACAGAGCTTGCGCGTCAGGGCAAGCTTGAGCCGGTGATTGGGC
GTGAGGCAGAGGTGTCACGGATGGTGCAGATTCTCAGCCGCAAGACCAAGAATAATCCGGTCTTGGTTGGTGATGCTGGT
GTCGGGAAAACGGCGCTTGCTTATGGCTTAGCCCAGCGGATTGTGGCTGGGACAACGACTTATGAGCTGCGTGAGATGCG
GGTGTTGGAGCTAGACATGATGAGTGTGGTTGCTGGCACGCGCTTTAGGGGCGATTTTGAAGAACGGATGAATCAAATCA
TTGCTGATATTGAAGCTGACGGCAAGATTATTTTATTTGTGGATGAGTTGCACACTATTATGGGGTCAGGTAGTGGGATT
GATAGCACTTTAGATGCGGCGAATATTTTGAAACCTGCCCTTTCCCGGGGCACGCTTCATATGGTTGGTGCCACGACCCA
AGAAGAATATCAAAAGCATATTGAAAAAGATGCTGCGCTTTCTCGCCGCTTTGCCAAGATTTTGATTGACGAACCAAGTG
AGGCTGATGCGACTGAGATTCTTATGGGGTTGAAGTCGACTTATGAAACGTTTCATCATGTGACGATTGCACGCGAAACA
GTGGAGACAGCAGTCAAGATGGCGCATCGCTATTTAACAAGCAAGCATCTCCCTGATTCTGCGATTGACCTACTGGATGA
GGCGAGCGCAACTGTCCAAGGTTTGGTGCAAAAGGAAGTGCCTAAGGATCTGACACCGGCCGATCAGGCGCTGATTGCTG
GTGATATGAAACGCGTCTCTAAGCTGCTTAAGCAAACACAGGATGAGAGCGAGCCTAAGGCAGTTGCAGTGACACCAGAC
CACATTTTGACCACCTTGAGCAAGCTATCTGGCATTCCAGTTGAAAAACTAAGCCGGGCAGACAGTCAGAAATATTTGCG
CCTCGAAAAAGAACTACACCAGCGGGTGATTGGCCAAGAGCAGGCTGTTTCTGTCATTGCTCGCGCTATCCGGCGTAATC
AATCTGGCATTCGCACAGGCAAGCGGCCGATTGGTTCTTTCATGTTCTTAGGCCCAACAGGTGTTGGTAAAACAGAACTC
GCCAAGGCTTTGGCAGAAGTGCTCTTTGATGACGCGTCTGCGCTGATTCGTTTTGACATGTCCGAATACATGGAGAAATT
TGCGGCAAGCCGGCTAAATGGCGCACCGCCGGGCTATGTTGGCTATGATGAAGGAGGCGAGCTGACAGAAAAAGTGCGCA
ATAAGCCTTATGCTGTGCTCTTGTTTGACGAAGTCGAAAAAGCCCACCCAGACATCTTTAATGTCTTGCTGCAAGTGCTT
GATGACGGTATGCTGACAGATAGCCGGGGTCGTAAGGTTGATTTTTCAAATACCATTATTATCATGACCAGTAACCTGGG
CGCAACAGCCTTGCGTGATGATAAGACTGTTGGTTTTGGGGCCAAGGCTGTCAGCCAGGACCACAAGGCTATGGAAAGCC
GAATTATGGAAGAGCTAAAACGCACCTACCGCCCAGAATTCATCAACCGGATTGATGAGAAGGTGGTCTTCCACAGCTTG
AGTCAGGCCAACATTAAAGATATTGTGAAAATTATGGTCAAGCCACTGGTAGCTGTCTTGGCAGAAAAAGGCGTGACGCT
GAAATTACAGCCGTCAGTGCTCAACCATCTGGCAACTATTGGCTATGATGCAGAGAATGGGGCAAGGCCTCTGCGCCGCG
CTATCCAAACAACCATCGAAGACCCGCTGTCAGAATTGATCCTAGCTGGCAAGCTGTCAGCCGGGCAAACACTGAAAGTT
GGCTTGAAGCAGCAAGAGGTGACCTTCGATAGTGTTTCTTAA
ATGGTTGACTACTCTAAAAAGATGCGAGACATCTTTCAACAAGCGCAGTACCAAGCTGCGCGTTACGACAGCCAATTCTT
AGAGACTTGGCACATTCTTTTAGCAATGGTCAAGGTAGAAAATTCTTTGGCTGGCCTGGTGTTTAGTGAATTTGAGCATA
GTATTCCGATGGAAGAATACGAAGCGGCAGCGATTTTAGCTATGGGTAAAAGCCCTAAGGAAGAGGTAACTAAGGTGCCG
TTGCGTCTGCAATCACGGGGATTGGAGGCGATTTTAGCTTTTGCGGCAACGATTCAAGAGGTGACCGGAGCTAAGGATGT
GGGGTCAGAGCATGTGCTTTTTGCGATGCTTTTGAATCCTGATGTTTTGGCGTGCCGTGTGCTAGAATTGGCGGGCTTTA
AGCTCAAGGACGACGGCAAGGGTGCTTTTCGTTTGGCGGATTTGCGTCGGGCGCTTGAGATGCATGCGGGTTATTCAAAG
GCGACTATTAAGGCCATCCATGATCTGCGTAAGCCCAAAAAAGCCAAGGCTGGTGGTTTTTCAGAGATGATGAAACCACA
AGCGACAGGGGACTTGTCTGATTTTACGCGCGATTTGACAGAGCTTGCGCGTCAGGGCAAGCTTGAGCCGGTGATTGGGC
GTGAGGCAGAGGTGTCACGGATGGTGCAGATTCTCAGCCGCAAGACCAAGAATAATCCGGTCTTGGTTGGTGATGCTGGT
GTCGGGAAAACGGCGCTTGCTTATGGCTTAGCCCAGCGGATTGTGGCTGGGACAACGACTTATGAGCTGCGTGAGATGCG
GGTGTTGGAGCTAGACATGATGAGTGTGGTTGCTGGCACGCGCTTTAGGGGCGATTTTGAAGAACGGATGAATCAAATCA
TTGCTGATATTGAAGCTGACGGCAAGATTATTTTATTTGTGGATGAGTTGCACACTATTATGGGGTCAGGTAGTGGGATT
GATAGCACTTTAGATGCGGCGAATATTTTGAAACCTGCCCTTTCCCGGGGCACGCTTCATATGGTTGGTGCCACGACCCA
AGAAGAATATCAAAAGCATATTGAAAAAGATGCTGCGCTTTCTCGCCGCTTTGCCAAGATTTTGATTGACGAACCAAGTG
AGGCTGATGCGACTGAGATTCTTATGGGGTTGAAGTCGACTTATGAAACGTTTCATCATGTGACGATTGCACGCGAAACA
GTGGAGACAGCAGTCAAGATGGCGCATCGCTATTTAACAAGCAAGCATCTCCCTGATTCTGCGATTGACCTACTGGATGA
GGCGAGCGCAACTGTCCAAGGTTTGGTGCAAAAGGAAGTGCCTAAGGATCTGACACCGGCCGATCAGGCGCTGATTGCTG
GTGATATGAAACGCGTCTCTAAGCTGCTTAAGCAAACACAGGATGAGAGCGAGCCTAAGGCAGTTGCAGTGACACCAGAC
CACATTTTGACCACCTTGAGCAAGCTATCTGGCATTCCAGTTGAAAAACTAAGCCGGGCAGACAGTCAGAAATATTTGCG
CCTCGAAAAAGAACTACACCAGCGGGTGATTGGCCAAGAGCAGGCTGTTTCTGTCATTGCTCGCGCTATCCGGCGTAATC
AATCTGGCATTCGCACAGGCAAGCGGCCGATTGGTTCTTTCATGTTCTTAGGCCCAACAGGTGTTGGTAAAACAGAACTC
GCCAAGGCTTTGGCAGAAGTGCTCTTTGATGACGCGTCTGCGCTGATTCGTTTTGACATGTCCGAATACATGGAGAAATT
TGCGGCAAGCCGGCTAAATGGCGCACCGCCGGGCTATGTTGGCTATGATGAAGGAGGCGAGCTGACAGAAAAAGTGCGCA
ATAAGCCTTATGCTGTGCTCTTGTTTGACGAAGTCGAAAAAGCCCACCCAGACATCTTTAATGTCTTGCTGCAAGTGCTT
GATGACGGTATGCTGACAGATAGCCGGGGTCGTAAGGTTGATTTTTCAAATACCATTATTATCATGACCAGTAACCTGGG
CGCAACAGCCTTGCGTGATGATAAGACTGTTGGTTTTGGGGCCAAGGCTGTCAGCCAGGACCACAAGGCTATGGAAAGCC
GAATTATGGAAGAGCTAAAACGCACCTACCGCCCAGAATTCATCAACCGGATTGATGAGAAGGTGGTCTTCCACAGCTTG
AGTCAGGCCAACATTAAAGATATTGTGAAAATTATGGTCAAGCCACTGGTAGCTGTCTTGGCAGAAAAAGGCGTGACGCT
GAAATTACAGCCGTCAGTGCTCAACCATCTGGCAACTATTGGCTATGATGCAGAGAATGGGGCAAGGCCTCTGCGCCGCG
CTATCCAAACAACCATCGAAGACCCGCTGTCAGAATTGATCCTAGCTGGCAAGCTGTCAGCCGGGCAAACACTGAAAGTT
GGCTTGAAGCAGCAAGAGGTGACCTTCGATAGTGTTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus mutans UA159 |
72.973 |
100 |
0.731 |
| clpC | Streptococcus thermophilus LMG 18311 |
70.747 |
100 |
0.711 |
| clpC | Streptococcus thermophilus LMD-9 |
70.747 |
100 |
0.711 |
| clpC | Streptococcus pneumoniae TIGR4 |
65.068 |
100 |
0.651 |
| clpC | Streptococcus pneumoniae Rx1 |
65.068 |
100 |
0.651 |
| clpC | Streptococcus pneumoniae D39 |
65.068 |
100 |
0.651 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.774 |
100 |
0.488 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
42.909 |
100 |
0.435 |