Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   K5J94_RS01895 Genome accession   NZ_CP081502
Coordinates   361282..362058 (-) Length   258 a.a.
NCBI ID   WP_221913311.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 356282..367058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS01875 - 357573..357977 (-) 405 WP_159545501.1 helix-turn-helix domain-containing protein -
  K5J94_RS01880 - 358102..358299 (-) 198 WP_159545499.1 DUF951 domain-containing protein -
  K5J94_RS01885 dnaN 358400..359536 (-) 1137 WP_159548266.1 DNA polymerase III subunit beta -
  K5J94_RS01890 dnaA 359690..361048 (-) 1359 WP_159563854.1 chromosomal replication initiator protein DnaA -
  K5J94_RS01895 spo0J 361282..362058 (-) 777 WP_221913311.1 ParB/RepB/Spo0J family partition protein Regulator
  K5J94_RS01900 htrA 362129..363346 (-) 1218 WP_159548270.1 S1C family serine protease Regulator
  K5J94_RS01905 rlmH 363556..364035 (+) 480 WP_159563855.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  K5J94_RS01920 - 364491..364664 (-) 174 Protein_323 transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29494.98 Da        Isoelectric Point: 9.2126

>NTDB_id=597041 K5J94_RS01895 WP_221913311.1 361282..362058(-) (spo0J) [Streptococcus halichoeri strain Shali_VAS-CPH]
MTEQIINIPVEEIVANPHQPRLTFDQAELLELAESIKMNGLIQPILVRKSEVYGYELIAGERRFKATQIAGLTQIPAIVR
QLSTTESMQQAIVENLQRSNLSPLEEAKAYQKILDKKQMTHEQLAKFMGKSRPYITNTIRLLQLPALISQSLEAKEISSG
HARALLSVDDQKEQLLFFDNIRRHHLSVRQTEQLIREQHQKVKKVKSKDIFIQAIEQEIAQSLGLDTSVSYHPQKQSGAI
TIHFANEQEMNRIINKLT

Nucleotide


Download         Length: 777 bp        

>NTDB_id=597041 K5J94_RS01895 WP_221913311.1 361282..362058(-) (spo0J) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGACTGAACAAATTATTAATATTCCGGTAGAAGAAATTGTAGCAAATCCTCACCAACCTCGTCTAACATTTGACCAAGC
TGAATTATTAGAACTAGCAGAATCAATAAAAATGAATGGGCTGATTCAACCCATCCTGGTCCGAAAATCAGAGGTATACG
GTTATGAATTAATCGCTGGTGAAAGGCGCTTTAAGGCCACTCAAATAGCAGGCTTAACGCAAATTCCAGCTATTGTCAGA
CAGTTATCAACCACTGAAAGTATGCAGCAAGCTATTGTTGAAAATTTACAGCGAAGCAATTTAAGCCCGTTGGAAGAAGC
TAAAGCTTATCAAAAGATTCTTGATAAAAAGCAAATGACCCATGAGCAATTAGCCAAATTTATGGGCAAATCACGACCTT
ACATTACTAATACTATTCGTTTATTGCAACTTCCTGCACTAATAAGTCAGTCCTTGGAGGCAAAAGAAATCAGCTCTGGT
CACGCACGCGCCTTATTAAGTGTTGACGACCAAAAAGAACAGCTTTTGTTTTTTGATAACATTCGGCGCCATCATTTAAG
TGTTCGTCAAACAGAACAGCTCATTAGAGAGCAACATCAAAAGGTCAAAAAAGTAAAATCTAAGGACATTTTCATTCAAG
CAATTGAACAAGAAATAGCCCAATCTTTAGGCTTAGATACTTCTGTTTCTTATCATCCTCAAAAACAAAGTGGCGCTATT
ACGATTCATTTTGCCAATGAGCAAGAAATGAACAGAATTATCAACAAATTGACATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(149-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.488

100

0.535