Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   K5J94_RS00395 Genome accession   NZ_CP081502
Coordinates   72507..73238 (-) Length   243 a.a.
NCBI ID   WP_159544376.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 67507..78238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS00370 rimP 68753..69238 (-) 486 WP_159544370.1 ribosome maturation factor RimP -
  K5J94_RS00380 trmB 69969..70604 (-) 636 WP_221913112.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K5J94_RS00385 ccrZ 70604..71395 (-) 792 WP_159544374.1 cell cycle regulator CcrZ -
  K5J94_RS00390 - 71467..72510 (-) 1044 WP_231700356.1 ABC transporter permease -
  K5J94_RS00395 pptA 72507..73238 (-) 732 WP_159544376.1 ABC transporter ATP-binding protein Regulator
  K5J94_RS00400 - 73484..73909 (+) 426 WP_159544378.1 HIT family protein -
  K5J94_RS00405 - 73900..74202 (+) 303 WP_159564540.1 hypothetical protein -
  K5J94_RS00410 brpA 74384..75688 (-) 1305 WP_159564538.1 biofilm formation/cell division transcriptional regulator BrpA -
  K5J94_RS00415 - 75700..76218 (-) 519 WP_159564536.1 GNAT family N-acetyltransferase -
  K5J94_RS00420 tsaE 76211..76654 (-) 444 WP_221913114.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26839.13 Da        Isoelectric Point: 4.4462

>NTDB_id=597031 K5J94_RS00395 WP_159544376.1 72507..73238(-) (pptA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MLTLNQVTGGYLNIPVLKEVTFAVNDGELVGLIGLNGAGKSTTINEIIGMLTPYQGNITIDGVRLAEDAFGYRQKIGFIP
ETPILYEELSLKEHIEAVAMAYDLAIELAFERAKPLLETFRLSDKLDWYPIHFSKGMKQKVMIICAFVIDPSLLILDEPF
LGLDPLAIADLIQLLEQEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGSLSQLQEAFGDPNASLNDIYLALTKE
DNA

Nucleotide


Download         Length: 732 bp        

>NTDB_id=597031 K5J94_RS00395 WP_159544376.1 72507..73238(-) (pptA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGTTAACACTAAATCAAGTGACAGGTGGTTATCTTAATATCCCTGTCTTAAAAGAGGTGACCTTTGCGGTAAATGATGG
TGAATTGGTCGGCCTCATTGGCCTAAATGGCGCTGGTAAATCAACCACCATTAATGAAATTATTGGCATGCTGACTCCCT
ATCAGGGTAATATTACCATTGATGGTGTTCGTTTGGCAGAAGATGCTTTTGGTTATCGCCAAAAAATCGGTTTCATTCCT
GAAACGCCAATCCTCTATGAAGAATTGAGCTTAAAAGAGCATATTGAAGCTGTGGCCATGGCCTATGATCTTGCGATTGA
GCTAGCTTTTGAGCGGGCCAAGCCCTTGCTTGAGACCTTTCGTTTATCAGACAAGCTAGATTGGTATCCGATTCATTTTT
CCAAAGGGATGAAGCAAAAGGTGATGATTATCTGTGCCTTTGTCATTGATCCTAGTCTTTTGATTCTTGATGAGCCTTTC
TTAGGATTGGATCCTTTGGCCATCGCTGATTTGATCCAGCTATTGGAGCAGGAAAAAGCAAAAGGGAAATCGATTTTGAT
GAGTACCCACGTCCTTGATTCGGCTGAAAAGATGTGTGACCGTTTTGTGATTCTCCATCAGGGCCAAGTTCGCGCTCAAG
GGAGCCTGTCGCAATTACAAGAAGCCTTTGGTGACCCAAATGCCAGTCTCAATGACATTTATCTGGCTCTAACTAAAGAG
GATAATGCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.385

98.354

0.712
  pptA Streptococcus thermophilus LMD-9

71.548

98.354

0.704