Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NAG71_RS08475 Genome accession   NZ_CP097883
Coordinates   1784591..1786018 (-) Length   475 a.a.
NCBI ID   WP_000980589.1    Uniprot ID   P04995
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779591..1791018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG71_RS08445 yeeZ 1779646..1780470 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NAG71_RS08450 yeeY 1780516..1781445 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NAG71_RS08455 yoeI 1781660..1781722 (+) 63 WP_010723108.1 membrane protein YoeI -
  NAG71_RS08460 plaP 1781712..1783070 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NAG71_RS08465 tsuA 1783249..1784307 (+) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  NAG71_RS08470 tsuB 1784321..1784548 (+) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NAG71_RS08475 sbcB 1784591..1786018 (-) 1428 WP_000980589.1 exodeoxyribonuclease I Machinery gene
  NAG71_RS08480 dacD 1786227..1787393 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NAG71_RS08485 sbmC 1787512..1787985 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  NAG71_RS08490 yeeA 1788183..1789241 (+) 1059 WP_001200891.1 FUSC family protein -
  NAG71_RS08495 tmaR 1789413..1789742 (+) 330 WP_000450409.1 DUF496 family protein -
  NAG71_RS08500 - 1789843..1790025 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NAG71_RS08505 - 1790097..1790225 (+) 129 Protein_1664 transposase domain-containing protein -
  NAG71_RS08510 - 1790514..1790606 (-) 93 Protein_1665 DUF957 domain-containing protein -
  NAG71_RS08515 yeeW 1790640..1790834 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=597027 NAG71_RS08475 WP_000980589.1 1784591..1786018(-) (sbcB) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=597027 NAG71_RS08475 WP_000980589.1 1784591..1786018(-) (sbcB) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1FXX
  PDB 2QXF
  PDB 3C94
  PDB 3C95
  PDB 3HL8
  PDB 3HP9
  PDB 4HCB
  PDB 4HCC
  PDB 4JRP
  PDB 4JRQ
  PDB 4JS4
  PDB 4JS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585