Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NAG70_RS16770 Genome accession   NZ_CP097882
Coordinates   3421809..3422414 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3416809..3427414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG70_RS16750 aes 3416846..3417805 (+) 960 WP_000801813.1 acetyl esterase -
  NAG70_RS16755 hemH 3417802..3418764 (-) 963 WP_001250103.1 ferrochelatase -
  NAG70_RS16760 adk 3419000..3419644 (-) 645 WP_001220233.1 adenylate kinase -
  NAG70_RS16765 htpG 3419825..3421699 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NAG70_RS16770 recR 3421809..3422414 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NAG70_RS16775 ybaB 3422414..3422743 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NAG70_RS16780 dnaX 3422796..3424727 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NAG70_RS16785 apt 3424856..3425407 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NAG70_RS16790 ybaN 3425560..3425937 (-) 378 WP_001188905.1 DUF454 family protein -
  NAG70_RS16795 priC 3426007..3426534 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NAG70_RS16800 rsmS 3426548..3426709 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=596966 NAG70_RS16770 WP_001195025.1 3421809..3422414(-) (recR) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=596966 NAG70_RS16770 WP_001195025.1 3421809..3422414(-) (recR) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443