NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	K5F93_RS04375	Genome accession	NZ_CP081490
Coordinates	927275..928642 (+)	Length	455 a.a.
NCBI ID	WP_025129215.1	Uniprot ID	-
Organism	Pseudomonas protegens strain PS1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 922275..933642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5F93_RS04355 (K5F93_04355)	-	923392..924168 (+)	777	WP_221810732.1	ferredoxin--NADP reductase	-
K5F93_RS04360 (K5F93_04360)	mscL	924360..924773 (-)	414	WP_221810733.1	large-conductance mechanosensitive channel protein MscL	-
K5F93_RS04365 (K5F93_04365)	-	925060..926601 (+)	1542	WP_221810734.1	catalase	-
K5F93_RS04370 (K5F93_04370)	-	926669..927229 (+)	561	WP_221810735.1	ankyrin repeat domain-containing protein	-
K5F93_RS04375 (K5F93_04375)	radA	927275..928642 (+)	1368	WP_025129215.1	DNA repair protein RadA	Machinery gene
K5F93_RS04380 (K5F93_04380)	-	928659..928931 (+)	273	WP_260627397.1	hypothetical protein	-
K5F93_RS04385 (K5F93_04385)	-	928948..929316 (-)	369	WP_221810736.1	PilZ domain-containing protein	-
K5F93_RS04390 (K5F93_04390)	-	929604..931670 (+)	2067	WP_221810737.1	carbon starvation CstA family protein	-
K5F93_RS04395 (K5F93_04395)	-	931687..931884 (+)	198	WP_221810738.1	YbdD/YjiX family protein	-
K5F93_RS04400 (K5F93_04400)	yjiA	931999..932970 (+)	972	WP_221810739.1	GTPase	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48756.27 Da Isoelectric Point: 7.1317

                                >NTDB_id=596953 K5F93_RS04375 WP_025129215.1 927275..928642(+) (radA) [Pseudomonas protegens strain PS1]

MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLKIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=596953 K5F93_RS04375 WP_025129215.1 927275..928642(+) (radA) [Pseudomonas protegens strain PS1]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCCACCTTTCCCAAATGGGCCGGGCAATGTGGCGAGTG

CGGGGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGTGGTGCCGCGGCGCCTGCCGGGCGCACTGGCTGGGCCG

GGCAACAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATTCCACGTTTCTCCACCGCTTCCGGCGAACTC

GACCGAGTGCTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGTTGATCGGTGGTGATCCGGGGATCGGCAAGTCGACCAT

CCTGCTGCAGACCCTGTGCAACATCGCCACGCGCATGCCGGCCTTGTACGTCACCGGCGAGGAGTCTCAGCAGCAGGTGG

CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGATCAGTTGCGGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC

ACCGCTCGGGTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCTCC

CGGCGGCGTGTCCCAGGTGCGCGAGAGCGCTGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG

TGGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG

GGCGAGTCCGACGGTCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGTTTTGGTGCGGTCAACGAGCTGGGTGTGTTCGG

CATGACCGACCGCGGTTTGAAGGAAGTCTCCAACCCTTCGGCGATTTTCCTCACTCGGGCCCAGGAAGAAGTGCCCGGCA

GCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTTGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC

AATCCACGCCGGGTCACCCTGGGCCTGGATCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGGAT

TCCGACCCATGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGA

TGGCCGCCGTGATGTCGAGCTTGCGCAACCGTCCGCTGCCCCATGACTTGCTGGTGTTCGGTGAAGTGGGCCTGTCCGGT

GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTTTGAAAGAGGCCGCCAAGCACGGCTTCAAGCGGGCCATCGTGCCCAA

GGGCAATGCGCCGAAAGAGTCGCCGCCGGGCTTGAAGATCATTGCCGTGACCCGCCTGGAACAGGCGTTGGATGCGCTCT

TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.234	100	0.495
radA	Streptococcus mitis SK321	46.053	100	0.462
radA	Streptococcus mitis NCTC 12261	45.833	100	0.459
radA	Streptococcus pneumoniae Rx1	45.833	100	0.459
radA	Streptococcus pneumoniae D39	45.833	100	0.459
radA	Streptococcus pneumoniae R6	45.833	100	0.459
radA	Streptococcus pneumoniae TIGR4	45.833	100	0.459

Detailed information NTG0596953