Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   K4120_RS07300 Genome accession   NZ_CP081488
Coordinates   1392977..1393441 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain LZN01     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387977..1398441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4120_RS07280 (K4120_07280) - 1388457..1390277 (+) 1821 WP_007409606.1 PAS domain-containing protein -
  K4120_RS07285 (K4120_07285) - 1390258..1391471 (-) 1214 Protein_1388 aminotransferase A -
  K4120_RS07290 (K4120_07290) - 1391672..1391833 (-) 162 WP_162889391.1 hypothetical protein -
  K4120_RS07295 (K4120_07295) cheV 1392022..1392933 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  K4120_RS07300 (K4120_07300) kre 1392977..1393441 (-) 465 WP_003154622.1 YkyB family protein Regulator
  K4120_RS07305 (K4120_07305) - 1393564..1394856 (-) 1293 WP_032868138.1 MFS transporter -
  K4120_RS07310 (K4120_07310) - 1394932..1395426 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  K4120_RS07315 (K4120_07315) - 1395501..1396364 (-) 864 WP_015239758.1 metallophosphoesterase -
  K4120_RS07320 (K4120_07320) fadH 1396509..1397273 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  K4120_RS07325 (K4120_07325) - 1397387..1397935 (+) 549 WP_007409614.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=596873 K4120_RS07300 WP_003154622.1 1392977..1393441(-) (kre) [Bacillus velezensis strain LZN01]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=596873 K4120_RS07300 WP_003154622.1 1392977..1393441(-) (kre) [Bacillus velezensis strain LZN01]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929