Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NAG75_RS01345 Genome accession   NZ_CP097873
Coordinates   104817..106022 (+) Length   401 a.a.
NCBI ID   WP_140361312.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99817..111022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS01305 - 100116..100445 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  NAG75_RS01310 - 100687..101055 (+) 369 WP_005489749.1 hypothetical protein -
  NAG75_RS01315 - 101119..101298 (-) 180 WP_005458791.1 hypothetical protein -
  NAG75_RS01320 - 102033..102653 (+) 621 WP_005481960.1 lysoplasmalogenase -
  NAG75_RS01325 - 102723..102944 (+) 222 WP_015297472.1 YecH family metal-binding protein -
  NAG75_RS01330 - 103064..103648 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  NAG75_RS01335 - 103702..103968 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  NAG75_RS01340 rsmD 103994..104593 (-) 600 WP_208893502.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NAG75_RS01345 pilA 104817..106022 (+) 1206 WP_140361312.1 signal recognition particle-docking protein FtsY Machinery gene
  NAG75_RS01350 ftsE 106045..106719 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  NAG75_RS01355 ftsX 106709..107677 (+) 969 WP_005481956.1 permease-like cell division protein FtsX -
  NAG75_RS01360 rpoH 107853..108713 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  NAG75_RS01365 glpE 109205..109525 (+) 321 WP_140122097.1 thiosulfate sulfurtransferase GlpE -
  NAG75_RS01370 glpG 109525..110367 (+) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  NAG75_RS01375 - 110427..110837 (-) 411 WP_015297469.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43751.40 Da        Isoelectric Point: 4.3471

>NTDB_id=596747 NAG75_RS01345 WP_140361312.1 104817..106022(+) (pilA) [Vibrio parahaemolyticus strain GL-601]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVKEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEEP
QVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKAS
RGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAA
VEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIM
LTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEFIDALFSRE
E

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=596747 NAG75_RS01345 WP_140361312.1 104817..106022(+) (pilA) [Vibrio parahaemolyticus strain GL-601]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAACCAAAAACTGA
AGAAACAGTAAAAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGAGCCA
CAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTTTTCGCTCGCCTTAAACGCAGCCTTAG
CCGTACGAAAGCGAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGC
TAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCT
CGTGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACA
GCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCA
TCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTAATGTTAGCGGCTGGCGATACTTTCCGAGCGGCAGCG
GTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGT
TATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACA
AAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATG
CTGACGCTGGATGCGGGTACTGGTCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGAT
TACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTGGTATTCCAATTCGCT
ACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAA
GAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(198-397)

SRP54-type protein, helical bundle domain (SRP54_N)

(117-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.133

93.516

0.469