Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NAG75_RS01085 Genome accession   NZ_CP097873
Coordinates   54609..56444 (+) Length   611 a.a.
NCBI ID   WP_005458577.1    Uniprot ID   Q87KH0
Organism   Vibrio parahaemolyticus strain GL-601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49609..61444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS01065 ggt 50026..51786 (-) 1761 WP_208893510.1 gamma-glutamyltransferase -
  NAG75_RS01070 - 51897..52556 (-) 660 WP_193283017.1 LysE family translocator -
  NAG75_RS01075 - 52648..53445 (-) 798 WP_023650110.1 AraC family transcriptional regulator -
  NAG75_RS01080 rarD 53520..54434 (-) 915 WP_024700228.1 EamA family transporter RarD -
  NAG75_RS01085 recQ 54609..56444 (+) 1836 WP_005458577.1 ATP-dependent DNA helicase RecQ Machinery gene
  NAG75_RS01090 - 56454..56759 (+) 306 WP_005458579.1 DUF3630 family protein -
  NAG75_RS01095 - 57053..57721 (+) 669 WP_005480953.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  NAG75_RS01100 gppA 57928..59421 (-) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  NAG75_RS01105 rhlB 59441..60754 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  NAG75_RS01110 trxA 60866..61192 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69227.13 Da        Isoelectric Point: 6.8897

>NTDB_id=596745 NAG75_RS01085 WP_005458577.1 54609..56444(+) (recQ) [Vibrio parahaemolyticus strain GL-601]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=596745 NAG75_RS01085 WP_005458577.1 54609..56444(+) (recQ) [Vibrio parahaemolyticus strain GL-601]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAAGCCAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGCCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGCCTCGAAAACTTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCCGAATACGCCGCTCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCATAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTACCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAGTACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGAGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

DEAD/DEAH box helicase (DEAD)

(31-189)

RQC domain (RQC)

(409-517)

HRDC domain (HRDC)

(537-603)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87KH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393