Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   M8779_RS11285 Genome accession   NZ_CP097846
Coordinates   2145632..2146600 (-) Length   322 a.a.
NCBI ID   WP_219501139.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140632..2151600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS11260 (M8779_11255) - 2141174..2142022 (-) 849 WP_241539249.1 YadA-like family protein -
  M8779_RS11265 (M8779_11260) - 2142467..2143120 (+) 654 WP_252295628.1 IS1595 family transposase -
  M8779_RS11270 (M8779_11265) - 2143155..2143913 (-) 759 WP_003696519.1 ABC transporter ATP-binding protein -
  M8779_RS11275 (M8779_11270) - 2143997..2144623 (-) 627 WP_003690385.1 FmdE family protein -
  M8779_RS11280 (M8779_11275) - 2144668..2145642 (-) 975 WP_010359688.1 iron chelate uptake ABC transporter family permease subunit -
  M8779_RS11285 (M8779_11280) ceuB 2145632..2146600 (-) 969 WP_219501139.1 ABC transporter permease Machinery gene
  M8779_RS11290 (M8779_11285) - 2146619..2146810 (-) 192 WP_162098494.1 hypothetical protein -
  M8779_RS11295 (M8779_11290) - 2146828..2147793 (-) 966 WP_010359690.1 siderophore ABC transporter substrate-binding protein -
  M8779_RS11300 (M8779_11295) fetA 2147945..2150107 (-) 2163 WP_252295630.1 TonB-dependent siderophore receptor FetA/FrpB -
  M8779_RS11305 (M8779_11300) - 2150612..2150902 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34420.69 Da        Isoelectric Point: 10.0891

>NTDB_id=596739 M8779_RS11285 WP_219501139.1 2145632..2146600(-) (ceuB) [Neisseria gonorrhoeae strain AT159]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=596739 M8779_RS11285 WP_219501139.1 2145632..2146600(-) (ceuB) [Neisseria gonorrhoeae strain AT159]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAGCTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGTTGGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.196

93.478

0.385