Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K5K96_RS00405 Genome accession   NZ_CP081472
Coordinates   64739..66550 (-) Length   603 a.a.
NCBI ID   WP_114289920.1    Uniprot ID   A0A369AU83
Organism   Vagococcus fluvialis strain 12B2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 59739..71550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K96_RS00380 (K5K96_00380) - 60877..61764 (-) 888 WP_227258906.1 RluA family pseudouridine synthase -
  K5K96_RS00385 (K5K96_00385) - 61767..62576 (-) 810 WP_114289918.1 NAD kinase -
  K5K96_RS00390 (K5K96_00390) - 62573..63244 (-) 672 WP_206172101.1 GTP pyrophosphokinase family protein -
  K5K96_RS00395 (K5K96_00395) - 63386..63982 (+) 597 WP_227276324.1 CYTH domain-containing protein -
  K5K96_RS00400 (K5K96_00400) - 64077..64688 (+) 612 WP_086341171.1 DsbA family protein -
  K5K96_RS00405 (K5K96_00405) pepF 64739..66550 (-) 1812 WP_114289920.1 oligoendopeptidase F Regulator
  K5K96_RS00410 (K5K96_00410) - 66576..67712 (-) 1137 WP_227276325.1 competence protein CoiA -
  K5K96_RS00415 (K5K96_00415) queG 67816..68961 (+) 1146 WP_227276326.1 tRNA epoxyqueuosine(34) reductase QueG -
  K5K96_RS00420 (K5K96_00420) abc-f 69014..70951 (-) 1938 WP_227276327.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68776.87 Da        Isoelectric Point: 4.6822

>NTDB_id=596690 K5K96_RS00405 WP_114289920.1 64739..66550(-) (pepF) [Vagococcus fluvialis strain 12B2]
MSETKQLPNRSDLTEKETWDLTPIFESDAAFDTAFEALTKKLEEAPSYQGTLKNGADSFLKAIDYLLSVYREVEKIYVYS
HLKNDQDTSNTTYQGLYARASSLAAQSGAALAWFQPEVLTLSDEEIDGYFAENKDLEVYRYFVKQMTDERAHVLSAKEEE
LLANASEVLSASSDTFSVLNNADLKFPIVKDENGHDVELSHGLYGQLMESTNREVREAAFKGMYSVYEQFRNTFASTLTA
NVKKHNFNAKVRNFSSAREAALSANHIPESVYDTLLDVVDKNLPLLHRYVALRKKLLNVDTLHMYDMYTPVLGDAPIKHS
YEEAKEISLKGLEPLGEEYIEIVKEAYADRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHDSLNHLYTLVHEMGHSVHS
YYTRKTQPYVYGDYSIFLAEIASTTNENLLTEYLLKTETDPKVRAFVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSEFLSEYYAGLNAKYYGPSVEKDPEIAYEWSRIPHFYYNYYVFQYSTGFSAAAALADKILKGEENALENYLGFLKAG
SSDYPIEVMKKAGVDMTQAAYIEDAMKVFEERLNELEALVETF

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=596690 K5K96_RS00405 WP_114289920.1 64739..66550(-) (pepF) [Vagococcus fluvialis strain 12B2]
ATGAGTGAAACAAAACAATTACCAAATCGTTCAGATTTAACAGAAAAAGAAACATGGGACTTAACACCAATTTTTGAAAG
TGATGCAGCTTTTGATACGGCTTTTGAAGCTTTAACAAAAAAATTAGAAGAAGCACCAAGCTATCAAGGAACGTTAAAAA
ATGGAGCAGATAGCTTCTTGAAAGCTATCGACTATTTATTAAGTGTTTACCGTGAAGTTGAAAAAATTTATGTGTATTCA
CATTTAAAAAATGACCAAGATACAAGTAACACAACTTATCAAGGTCTATATGCAAGAGCAAGTAGTTTAGCAGCTCAATC
AGGAGCAGCCCTAGCTTGGTTTCAACCAGAAGTTTTAACTTTATCAGATGAAGAAATTGATGGTTACTTTGCTGAAAATA
AAGACTTAGAAGTTTATCGTTATTTTGTTAAACAAATGACTGATGAAAGAGCACACGTTTTATCAGCGAAAGAAGAAGAA
TTATTAGCTAATGCTAGTGAAGTGTTATCAGCTTCAAGTGATACATTCTCAGTTTTAAACAATGCGGATTTAAAATTCCC
AATTGTTAAGGATGAAAATGGTCATGATGTTGAGTTATCACATGGTTTATATGGTCAATTAATGGAAAGCACTAACCGTG
AAGTTAGAGAAGCAGCCTTTAAAGGTATGTACAGTGTGTATGAACAATTTAGAAATACTTTTGCAAGTACTTTAACAGCT
AATGTTAAAAAACATAACTTTAATGCTAAGGTTAGAAACTTCTCTTCAGCTCGCGAAGCAGCTTTAAGTGCTAACCATAT
TCCAGAATCAGTTTATGATACATTACTTGATGTAGTTGATAAAAACTTACCATTATTACATCGTTATGTGGCTTTACGTA
AAAAATTACTTAATGTTGATACCTTACATATGTACGATATGTATACACCAGTTTTAGGAGATGCTCCAATTAAACATTCT
TATGAGGAAGCAAAAGAAATTTCTCTTAAAGGATTAGAGCCACTTGGTGAAGAGTATATTGAAATTGTTAAGGAAGCCTA
TGCAGATCGCTGGATTGACGTCGTTGAAAATAAAGGAAAACGTAGTGGTGCCTACTCATCTGGAAGTTACGACACAAAAC
CTTATATTCTTTTAAACTGGCATGATAGTTTAAATCATCTGTATACATTAGTTCATGAGATGGGACATAGTGTTCATAGT
TATTACACACGTAAAACACAACCTTATGTGTATGGTGATTATTCAATTTTCCTTGCAGAGATTGCTTCAACAACAAATGA
AAACTTATTAACTGAGTATCTGTTAAAAACAGAAACAGATCCTAAAGTTCGTGCTTTTGTCTTAAATCATTATTTAGATG
GTTTCAAAGGAACAATCTTTAGACAAACTCAATTTGCTGAATTTGAACATTTCATTCACACAGAAGATGCTAAAGGCACT
CCTCTAACAAGTGAATTCTTAAGTGAGTATTATGCTGGCCTAAATGCTAAATATTATGGCCCTTCAGTTGAAAAAGACCC
AGAAATTGCTTATGAGTGGAGTCGTATTCCTCATTTCTATTACAATTACTATGTCTTCCAATACTCAACAGGATTTTCTG
CAGCAGCAGCTTTAGCAGATAAAATTCTTAAGGGTGAGGAAAATGCTTTAGAAAACTATTTAGGATTCTTAAAAGCAGGA
AGTAGTGATTACCCAATTGAAGTGATGAAAAAAGCTGGTGTTGATATGACACAAGCTGCTTATATTGAAGATGCGATGAA
AGTCTTTGAAGAAAGATTAAACGAATTAGAAGCATTAGTAGAAACATTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A369AU83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.312

98.342

0.544