Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M8779_RS02760 Genome accession   NZ_CP097846
Coordinates   525524..526189 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520524..531189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS02735 (M8779_02730) cysT 520794..521632 (-) 839 Protein_531 sulfate ABC transporter permease subunit CysT -
  M8779_RS02740 (M8779_02735) - 521818..522150 (+) 333 WP_003687908.1 hypothetical protein -
  M8779_RS02745 (M8779_02740) - 522477..522986 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  M8779_RS02750 (M8779_02745) - 523218..523799 (-) 582 WP_003698180.1 superoxide dismutase -
  M8779_RS02755 (M8779_02750) dnaB 523963..525369 (+) 1407 WP_047917169.1 replicative DNA helicase -
  M8779_RS02760 (M8779_02755) pilH 525524..526189 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  M8779_RS02765 (M8779_02760) pilV 526221..526832 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  M8779_RS02770 (M8779_02765) pilJ 526829..527809 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  M8779_RS02775 (M8779_02770) pilK 527788..528399 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  M8779_RS02780 (M8779_02775) pilL 528401..528874 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  M8779_RS02785 (M8779_02780) - 528944..529252 (-) 309 WP_003706588.1 AzlD family protein -
  M8779_RS02790 (M8779_02785) - 529249..529958 (-) 710 Protein_542 AzlC family ABC transporter permease -
  M8779_RS02795 (M8779_02790) dut 530124..530576 (+) 453 WP_003702446.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=596689 M8779_RS02760 WP_047918678.1 525524..526189(+) (pilH) [Neisseria gonorrhoeae strain AT159]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=596689 M8779_RS02760 WP_047918678.1 525524..526189(+) (pilH) [Neisseria gonorrhoeae strain AT159]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869