Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K5K97_RS08385 Genome accession   NZ_CP081470
Coordinates   1642781..1644592 (+) Length   603 a.a.
NCBI ID   WP_227288494.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 25B2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637781..1649592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K97_RS08370 (K5K97_08360) - 1638380..1640317 (+) 1938 WP_114289923.1 ABC-F family ATP-binding cassette domain-containing protein -
  K5K97_RS08375 (K5K97_08365) queG 1640370..1641515 (-) 1146 WP_167799707.1 tRNA epoxyqueuosine(34) reductase QueG -
  K5K97_RS08380 (K5K97_08370) - 1641619..1642755 (+) 1137 WP_227288493.1 competence protein CoiA -
  K5K97_RS08385 (K5K97_08375) pepF 1642781..1644592 (+) 1812 WP_227288494.1 oligoendopeptidase F Regulator
  K5K97_RS08390 (K5K97_08380) - 1644643..1645254 (-) 612 WP_227288495.1 DsbA family protein -
  K5K97_RS08395 (K5K97_08385) - 1645349..1645945 (-) 597 WP_227288496.1 CYTH domain-containing protein -
  K5K97_RS08400 (K5K97_08390) - 1646087..1646758 (+) 672 WP_206971854.1 GTP pyrophosphokinase family protein -
  K5K97_RS08405 (K5K97_08395) - 1646755..1647564 (+) 810 WP_207058390.1 NAD kinase -
  K5K97_RS08410 (K5K97_08400) - 1647567..1648454 (+) 888 WP_227288497.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68846.92 Da        Isoelectric Point: 4.6266

>NTDB_id=596670 K5K97_RS08385 WP_227288494.1 1642781..1644592(+) (pepF) [Vagococcus fluvialis strain 25B2]
MSETKQLPNRSDLTEKETWDLTPIFESDAAFDTAFEALTKKLEEAPSYQGTLKNGADSFLKAIDYLLSVYREVEKIYVYS
HLKNDQDTSNTTYQGLYARASSLAAQSGAALAWFQPEVLTLSDEEIDGYFAENKDLEVYRYFVKQMTDERAHVLSAKEEE
LLANASEVLSASSDTFSVLNNADLKFPIVKDENGYDVELSHGLYGQLMESTNREVREAAFKGMYSVYEQFRNTFASTLTA
NVKKHNFNAKVRNFSSAREAALSANHIPESVYDTLLDVVDKNLPLLHRYVALRKKLLNVDTLHMYDMYTPVLGDAPIKHS
YEEAKEISLKGLEPLGEEYIEIVKEAYADRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHDSLNHLYTLVHEMGHSVHS
YYTRKTQPYVYGDYSIFLAEIASTTNENLLTEYLLKTETDPKVRAFVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSEFLSDYYADLNAKYYGPSVEKDPEIAYEWSRIPHFYYNYYVFQYSTGFSAAAALADKILKGEENALENYLGFLKAG
SSDYPIEVMKKAGVDMTQAAYIEDAMKVFEERLNELEALVETF

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=596670 K5K97_RS08385 WP_227288494.1 1642781..1644592(+) (pepF) [Vagococcus fluvialis strain 25B2]
ATGAGTGAAACAAAACAATTACCAAATCGTTCAGATTTAACAGAAAAAGAAACATGGGACTTAACACCAATTTTTGAAAG
TGATGCAGCTTTTGATACGGCTTTTGAAGCTTTAACAAAAAAATTAGAAGAAGCACCAAGCTATCAAGGAACGTTAAAAA
ATGGAGCAGATAGCTTCTTGAAAGCTATCGACTATTTATTAAGTGTTTACCGTGAAGTTGAAAAAATTTATGTGTATTCA
CATTTAAAAAATGACCAAGATACAAGTAACACAACTTATCAAGGTCTATATGCAAGAGCAAGTAGTTTAGCAGCTCAATC
AGGAGCAGCCCTAGCTTGGTTTCAACCAGAAGTTTTAACTTTATCAGATGAAGAAATTGATGGTTACTTTGCTGAAAATA
AAGACTTAGAAGTTTATCGTTATTTTGTTAAACAAATGACTGATGAAAGAGCACACGTTTTATCAGCGAAAGAAGAAGAA
TTATTAGCTAATGCTAGTGAAGTGTTATCAGCTTCAAGTGATACATTCTCAGTTTTAAACAATGCGGATTTAAAATTCCC
AATTGTTAAGGATGAAAATGGTTATGATGTTGAGTTATCACATGGTTTATATGGTCAATTAATGGAAAGCACTAACCGTG
AAGTTAGAGAAGCAGCCTTTAAAGGTATGTACAGTGTGTATGAACAATTTAGAAATACTTTTGCAAGTACTTTAACAGCT
AATGTTAAAAAACATAACTTTAATGCTAAGGTTAGAAACTTCTCTTCAGCTCGCGAAGCAGCTTTAAGTGCTAACCATAT
TCCAGAATCAGTTTATGATACATTACTTGATGTAGTTGATAAAAACTTACCATTATTACATCGTTATGTGGCTTTACGTA
AAAAATTACTTAATGTTGATACCTTACATATGTACGATATGTATACACCAGTTTTAGGAGATGCTCCAATTAAACATTCT
TATGAGGAAGCAAAAGAAATTTCTCTTAAAGGATTAGAGCCACTTGGTGAAGAGTATATTGAAATTGTTAAGGAAGCCTA
TGCAGATCGCTGGATTGACGTCGTTGAAAATAAAGGAAAACGTAGTGGTGCCTACTCATCTGGAAGTTACGACACAAAAC
CTTATATTCTTTTAAACTGGCATGATAGTTTAAATCATCTGTATACATTAGTTCATGAGATGGGACATAGTGTTCATAGT
TATTACACACGTAAAACACAACCTTATGTGTATGGTGATTATTCAATTTTCCTTGCAGAGATTGCTTCAACAACAAATGA
AAACTTATTAACTGAGTATTTATTAAAAACAGAAACAGATCCTAAAGTCCGTGCCTTTGTCTTAAACCACTATTTAGATG
GATTCAAAGGAACAATCTTTAGACAAACTCAATTTGCTGAATTTGAACATTTCATTCACACAGAAGATGCTAAAGGAACT
CCTCTAACAAGTGAATTCTTAAGTGATTATTATGCTGATTTAAACGCTAAATATTATGGACCTTCAGTTGAAAAAGACCC
AGAAATTGCTTATGAGTGGAGTCGTATTCCTCATTTCTATTACAATTACTATGTCTTCCAATACTCAACAGGATTTTCTG
CAGCAGCAGCTTTAGCAGATAAAATTCTTAAGGGTGAGGAAAATGCTTTAGAAAACTATTTAGGATTCTTAAAAGCAGGA
AGTAGTGATTACCCAATTGAAGTGATGAAAAAAGCTGGTGTTGATATGACACAAGCTGCATATATTGAAGATGCGATGAA
AGTCTTTGAAGAAAGATTAAACGAATTAGAAGCATTAGTAGAAACATTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.481

98.342

0.546