Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K5K97_RS03120 Genome accession   NZ_CP081470
Coordinates   619081..620856 (+) Length   591 a.a.
NCBI ID   WP_227289286.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 25B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 614081..625856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K97_RS03105 (K5K97_03105) - 615378..616052 (+) 675 WP_167798790.1 response regulator transcription factor -
  K5K97_RS03110 (K5K97_03110) - 616049..617089 (+) 1041 WP_114290101.1 HAMP domain-containing sensor histidine kinase -
  K5K97_RS14235 - 617143..617241 (-) 99 Protein_597 DUF3788 domain-containing protein -
  K5K97_RS03115 (K5K97_03115) rcrP 617324..619081 (+) 1758 WP_227289285.1 ABC transporter ATP-binding protein Regulator
  K5K97_RS03120 (K5K97_03120) rcrQ 619081..620856 (+) 1776 WP_227289286.1 ABC transporter ATP-binding protein Regulator
  K5K97_RS03125 (K5K97_03125) - 621104..622416 (-) 1313 Protein_600 IS3 family transposase -
  K5K97_RS03130 (K5K97_03130) - 622521..623921 (-) 1401 WP_227289287.1 DHA2 family efflux MFS transporter permease subunit -
  K5K97_RS03135 (K5K97_03135) - 623899..624357 (-) 459 WP_114290097.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5K97_RS03140 (K5K97_03140) - 624527..625507 (-) 981 WP_227289288.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65775.81 Da        Isoelectric Point: 5.9391

>NTDB_id=596656 K5K97_RS03120 WP_227289286.1 619081..620856(+) (rcrQ) [Vagococcus fluvialis strain 25B2]
MTKEKSKKKNNFSGNWKKLIAYSKRYMPIIIIALIASMIGSVLTLIGPDKLSEITDLITQGIMTGIDLDEVKRIGILLVF
FYGFGSLLSIIQGFIMASVTQIISRNLREDISKKINRLPLAYFNRNSTGDVLSRVTNDVDTIGQTLNQSIGTLVSAITLL
FGSLFMMLKTNVTLTATAVGATIIGFVLMSLIMSKSQKYFSQQQNDLGRINSHVEEIYTGQSVVKIYNAKESNKKVFDEM
NESLKTSGFKAQCLSGLMMPIMQFIGNFGYVAVCIVGAVLANNGTISFGVIVAFILYVRYFTQPLSQIAQSFQSLQSTSA
ASKRVFEFLGEEEMSDESHKEDTLDKATGEVSFNHVSFGYTPEKKVIKDFSAEVKPGQKIAIVGPTGAGKTTLINLLMRF
YEVDSGDIKIDGIKTKDLPRHVVNNQFSMILQDTWLFEGTIKENIVYNMTGITEEEIQKACESVGIHHFIETLPEKYDTI
LNDQLSLSSGQKQQLTIARAIVDNKPMLILDEATSSVDTRTELQIQSSMDQLMENRTSFIIAHRLSTIRNADVILVMKDG
DIIEQGNHDDLIAQNGFYSELYNSQFEEKIA

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=596656 K5K97_RS03120 WP_227289286.1 619081..620856(+) (rcrQ) [Vagococcus fluvialis strain 25B2]
ATGACTAAAGAAAAATCAAAAAAGAAAAATAACTTTAGTGGTAATTGGAAAAAACTAATTGCCTACTCTAAAAGATATAT
GCCTATTATTATCATTGCGCTAATTGCCTCTATGATTGGTTCTGTTCTAACTTTAATTGGGCCAGACAAATTATCAGAAA
TTACAGATTTAATCACTCAAGGAATTATGACTGGTATTGATTTAGATGAAGTCAAAAGAATTGGTATTCTGCTAGTCTTT
TTCTATGGATTTGGATCTCTTCTTTCAATCATTCAAGGTTTTATTATGGCTAGCGTGACACAAATTATCTCTCGTAATTT
AAGAGAAGATATTTCGAAAAAAATCAATCGATTACCTCTAGCTTATTTTAATAGAAATTCTACTGGAGATGTTTTATCTC
GTGTTACAAATGATGTTGACACAATTGGCCAAACTCTAAACCAAAGCATCGGAACTTTAGTTTCTGCCATTACGTTACTA
TTTGGTTCTCTATTTATGATGTTAAAAACTAACGTCACACTAACTGCTACAGCTGTTGGAGCTACTATTATTGGATTTGT
TTTAATGAGTTTAATTATGAGCAAATCTCAAAAATACTTCTCACAACAACAAAATGATTTAGGACGCATTAACAGTCACG
TCGAAGAAATTTATACAGGTCAATCAGTGGTTAAAATTTATAATGCTAAAGAATCTAATAAAAAAGTCTTTGATGAGATG
AATGAAAGTCTAAAAACAAGTGGTTTTAAAGCACAATGTTTATCTGGATTAATGATGCCAATTATGCAATTTATAGGAAA
TTTTGGTTATGTTGCTGTTTGTATTGTAGGAGCTGTTCTAGCCAATAACGGAACAATTAGTTTTGGTGTCATTGTAGCTT
TCATCCTTTATGTACGCTACTTTACTCAACCACTTAGTCAAATTGCCCAATCATTCCAATCATTACAGTCTACTTCTGCA
GCAAGTAAACGTGTTTTTGAATTTTTAGGCGAAGAAGAAATGTCTGATGAATCTCATAAAGAAGATACATTAGATAAAGC
AACTGGTGAAGTCAGCTTTAATCATGTCAGTTTTGGCTATACTCCTGAGAAAAAAGTAATAAAAGATTTCTCTGCCGAAG
TAAAACCTGGACAAAAAATTGCTATTGTTGGGCCAACTGGTGCTGGTAAAACAACTTTAATTAATTTATTAATGAGATTT
TACGAAGTAGATAGTGGGGATATTAAAATTGATGGTATTAAAACAAAAGACCTACCACGTCATGTTGTAAACAATCAATT
TAGTATGATTCTTCAAGATACATGGTTATTTGAAGGAACCATTAAAGAAAATATCGTTTATAATATGACTGGTATTACAG
AGGAAGAAATTCAAAAAGCCTGTGAATCTGTCGGTATTCATCACTTTATTGAAACGCTACCTGAAAAATATGATACTATT
TTAAATGACCAATTGAGTCTATCATCTGGTCAAAAACAGCAGCTAACAATTGCCCGCGCAATTGTTGATAACAAACCTAT
GTTAATTCTTGATGAAGCAACAAGTTCAGTTGATACAAGAACAGAGTTACAAATTCAATCTTCAATGGATCAATTAATGG
AAAATAGAACATCCTTCATTATTGCTCACCGTTTATCTACTATTAGAAACGCTGATGTTATTTTAGTTATGAAAGATGGC
GATATTATTGAACAAGGAAATCACGATGATTTAATTGCTCAAAATGGTTTCTATTCAGAACTTTATAATAGCCAATTTGA
AGAAAAAATAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-305)

ABC transporter (ABC_tran)

(368-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.559

99.323

0.562