Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K5K97_RS03115 Genome accession   NZ_CP081470
Coordinates   617324..619081 (+) Length   585 a.a.
NCBI ID   WP_227289285.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 25B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 612324..624081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K97_RS03095 (K5K97_03095) - 613068..613808 (-) 741 WP_227289283.1 cyclase family protein -
  K5K97_RS03100 (K5K97_03100) - 613830..614951 (-) 1122 WP_227289284.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  K5K97_RS03105 (K5K97_03105) - 615378..616052 (+) 675 WP_167798790.1 response regulator transcription factor -
  K5K97_RS03110 (K5K97_03110) - 616049..617089 (+) 1041 WP_114290101.1 HAMP domain-containing sensor histidine kinase -
  K5K97_RS14235 - 617143..617241 (-) 99 Protein_597 DUF3788 domain-containing protein -
  K5K97_RS03115 (K5K97_03115) rcrP 617324..619081 (+) 1758 WP_227289285.1 ABC transporter ATP-binding protein Regulator
  K5K97_RS03120 (K5K97_03120) rcrQ 619081..620856 (+) 1776 WP_227289286.1 ABC transporter ATP-binding protein Regulator
  K5K97_RS03125 (K5K97_03125) - 621104..622416 (-) 1313 Protein_600 IS3 family transposase -
  K5K97_RS03130 (K5K97_03130) - 622521..623921 (-) 1401 WP_227289287.1 DHA2 family efflux MFS transporter permease subunit -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64529.99 Da        Isoelectric Point: 7.0454

>NTDB_id=596655 K5K97_RS03115 WP_227289285.1 617324..619081(+) (rcrP) [Vagococcus fluvialis strain 25B2]
MVKIFRYLSKTEYALAGVSLLFIIAQVWLDLKLPDYMNEITKLVQTEGSEMSEILSAGGMMLLCAVTSLLSAVIVAVIVA
KIAANYSARLREKLFGKVQSLSTEEINHFSIPSLITRTTNDITQVQMLIVMGLQAMVKAPILAVWAILKISNKSWQWTFA
TGVAIVVLLVFVITCMILALPKMKKIQGYTDKLNSVTRENLTGLQVVRAYNAEDYQEKKFDDANETLMRTNVFTNRTFAF
LMPGIQLVMSGLTLSIYWLGASLINSAALENKLNLFSDMVVFSSYAMQVIMAFMMLVMIFIMIPRASVSAKRILEVLDSK
SALVDGKLTGENSAVKGKIEFKHVNFKYPQADGMALNDINFTVTQGETLAIIGATGSGKTTLVNLIARLYDTTSGEILVD
DINVKDYSHAHLNNKLGFVTQKATLFSGTIASNVAFGDNGNPNKLDSDIVDSIYTAQAAEFVEKMPLGYDHAVAQNGGNL
SGGQKQRLSIARAINRRSEILIFDDSFSALDYKTDRNLRESLKKDCKDTTKIIVAQRIGTIRDADTILVLDEGQLVGKGS
HNELMENNPVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=596655 K5K97_RS03115 WP_227289285.1 617324..619081(+) (rcrP) [Vagococcus fluvialis strain 25B2]
ATGGTTAAAATATTTAGATATTTAAGTAAAACGGAATACGCCCTTGCTGGAGTTAGTTTACTTTTTATCATAGCTCAGGT
TTGGTTAGATTTAAAACTGCCTGACTATATGAATGAAATCACTAAACTTGTTCAAACTGAAGGAAGTGAAATGAGTGAAA
TCCTCTCCGCTGGTGGGATGATGTTACTCTGTGCTGTTACTAGTTTGTTGAGTGCTGTCATTGTAGCTGTGATTGTCGCA
AAAATTGCTGCTAATTACAGTGCTAGATTACGTGAAAAATTATTTGGAAAAGTACAATCATTATCAACTGAGGAAATTAA
TCATTTCTCTATTCCAAGTTTAATTACCCGTACAACAAATGATATTACTCAAGTTCAAATGCTAATTGTAATGGGACTTC
AAGCAATGGTTAAAGCTCCTATTTTAGCAGTCTGGGCAATTCTGAAGATTTCTAACAAAAGTTGGCAATGGACATTTGCC
ACTGGTGTTGCTATTGTCGTTCTTTTAGTTTTTGTGATTACGTGTATGATTTTAGCACTGCCAAAAATGAAAAAAATTCA
AGGATATACTGATAAACTTAATTCAGTAACTCGTGAAAATTTAACTGGTTTACAAGTAGTTAGGGCATATAATGCTGAGG
ATTATCAAGAGAAAAAATTTGATGATGCCAATGAAACCTTAATGAGAACAAACGTCTTCACCAATCGAACTTTCGCCTTT
TTAATGCCTGGTATTCAATTAGTCATGAGTGGTTTAACTCTTTCTATTTACTGGCTAGGTGCGTCATTAATCAATAGTGC
AGCACTTGAAAATAAATTAAATCTATTTTCTGATATGGTTGTTTTCTCTTCATATGCCATGCAAGTTATTATGGCCTTTA
TGATGTTAGTTATGATTTTTATTATGATTCCAAGAGCTAGCGTTTCTGCTAAGCGTATTTTAGAAGTTCTAGACTCTAAA
TCAGCTCTTGTTGATGGAAAATTAACAGGAGAAAATTCAGCGGTTAAAGGTAAAATTGAATTTAAACATGTTAACTTCAA
ATACCCACAAGCTGATGGTATGGCTCTTAATGACATTAACTTTACTGTGACCCAAGGTGAAACTTTAGCAATTATTGGTG
CAACTGGTAGCGGAAAAACAACTTTAGTCAATTTAATTGCAAGGCTTTATGACACAACAAGTGGTGAGATTTTAGTTGAT
GACATTAATGTTAAAGATTACTCTCATGCTCATTTAAACAACAAGCTTGGTTTTGTGACTCAAAAAGCGACTCTCTTTAG
TGGAACAATTGCTAGTAACGTGGCTTTTGGAGATAATGGCAATCCCAATAAATTAGATTCAGATATTGTTGATTCTATAT
ACACTGCTCAAGCAGCTGAATTTGTTGAAAAAATGCCTTTAGGCTATGATCATGCTGTTGCTCAAAATGGTGGTAACTTA
TCTGGAGGACAAAAACAACGTTTATCTATAGCTAGAGCCATTAATCGTCGCTCAGAAATTTTAATTTTTGATGATTCGTT
CTCAGCACTTGATTACAAAACAGATCGTAATTTAAGAGAAAGTCTTAAAAAAGATTGTAAAGACACAACTAAAATTATCG
TTGCTCAGCGTATTGGAACCATTAGAGATGCCGATACTATTTTAGTTCTTGATGAAGGTCAATTGGTTGGCAAAGGTTCT
CATAATGAGTTAATGGAAAACAACCCTGTTTATCAAGAAATTGCCTACTCACAACTTTCTAAGGAGGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.678

100

0.526