Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M9H69_RS08245 Genome accession   NZ_CP097843
Coordinates   1611070..1611666 (+) Length   198 a.a.
NCBI ID   WP_250315358.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606070..1616666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS08220 (M9H69_08220) - 1606971..1608413 (-) 1443 WP_250315355.1 cell division site-positioning protein MapZ family protein -
  M9H69_RS08225 (M9H69_08225) - 1608426..1609583 (-) 1158 WP_250315356.1 class I SAM-dependent RNA methyltransferase -
  M9H69_RS08235 (M9H69_08235) gpsB 1610077..1610406 (-) 330 WP_125391499.1 cell division regulator GpsB -
  M9H69_RS08240 (M9H69_08240) - 1610476..1611003 (-) 528 WP_250315357.1 SLOG family protein -
  M9H69_RS08245 (M9H69_08245) recU 1611070..1611666 (+) 597 WP_250315358.1 Holliday junction resolvase RecU Machinery gene
  M9H69_RS08250 (M9H69_08250) pbp1a 1611663..1613837 (+) 2175 WP_250315359.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23080.54 Da        Isoelectric Point: 9.8088

>NTDB_id=596639 M9H69_RS08245 WP_250315358.1 1611070..1611666(+) (recU) [Streptococcus oralis strain HP01]
MVNYPHKISSPKRQAPLSQTKNFANRGMSFEKMINATNDYYLSHGMAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYEGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAVDLIRFYHQDKGQK
SMPLGYIRENGYRIELGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=596639 M9H69_RS08245 WP_250315358.1 1611070..1611666(+) (recU) [Streptococcus oralis strain HP01]
ATGGTCAACTATCCACATAAAATTTCATCTCCGAAGAGACAAGCGCCCCTTTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAACGCTACGAACGATTATTACTTGTCGCATGGGATGGCAGTGATTCACAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCCAAGATCGTTGAAGCCTACTTTAGACAAGCTTCA
ACCACAGACTATTCAGGGGTTTATGAGGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATTCC
GATGAAGAATTTTCATCTTCATCAGATCCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTACTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTACCGGCTGTTGACCTGATTCGTTTCTATCATCAAGATAAGGGACAAAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCTGGGTGCCTTTCCCCAGATTCCCTATCTCGATAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49