Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M9H69_RS07600 Genome accession   NZ_CP097843
Coordinates   1481007..1483229 (-) Length   740 a.a.
NCBI ID   WP_250316176.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476007..1488229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS07585 (M9H69_07585) - 1477518..1478219 (-) 702 WP_250315282.1 M57 family metalloprotease -
  M9H69_RS07590 (M9H69_07590) - 1478324..1479103 (-) 780 WP_250315283.1 alpha/beta hydrolase family protein -
  M9H69_RS07595 (M9H69_07595) - 1479172..1480833 (-) 1662 WP_247946051.1 ribonuclease J -
  M9H69_RS07600 (M9H69_07600) recJ 1481007..1483229 (-) 2223 WP_250316176.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M9H69_RS07605 (M9H69_07605) - 1483406..1484164 (+) 759 WP_250315284.1 amino acid ABC transporter ATP-binding protein -
  M9H69_RS07610 (M9H69_07610) - 1484175..1484969 (+) 795 WP_250315285.1 transporter substrate-binding domain-containing protein -
  M9H69_RS07615 (M9H69_07615) - 1484982..1485659 (+) 678 WP_250315286.1 amino acid ABC transporter permease -
  M9H69_RS07620 (M9H69_07620) - 1485669..1486328 (+) 660 WP_250315287.1 amino acid ABC transporter permease -
  M9H69_RS07625 (M9H69_07625) - 1486459..1487241 (+) 783 WP_250315288.1 DUF4037 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82620.30 Da        Isoelectric Point: 4.3766

>NTDB_id=596629 M9H69_RS07600 WP_250316176.1 1481007..1483229(-) (recJ) [Streptococcus oralis strain HP01]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLENLHDPYLLHDMDKAVERIRQAIEA
GENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIKLAQ
SMGVDVIVTDHHSMPETLPAAYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
IMVQYGLEMLGHTQRIGLQEMLDMAGIVANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVVPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRELFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLETVKNFERLAPFGMDNQKP
VFYIRDFTVESARSMGAGNTHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAQVE
GVQLFNIRGKNAVLPEGVPVLDFSGELPELETSDAVVVKTIPEDITLLKTIFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIAESQIYQNLKQTVKD
QEMLALGTVQEMYNFLMRKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=596629 M9H69_RS07600 WP_250316176.1 1481007..1483229(-) (recJ) [Streptococcus oralis strain HP01]
TTGATAACTCCTACTTATGAATGGCAGTTTGCTCCGCAAGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCGCGGTTATTATTTGAAAGAGGAATTCAAGACGAAGAAAGCCTGAAGAAGTTTTTAGAACCTT
CCTTGGAGAACTTGCATGACCCCTACTTGCTCCATGATATGGACAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGCA
GGGGAAAATATTCTCATCTATGGAGATTACGATGCGGATGGCATGACTTCAGCTTCTATTGTTAAGGAAAGTTTGGAACA
ACTTGGTGCCGAGTGCCGTGTTTACTTACCCAATCGCTTTACCGATGGCTATGGTCCCAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCTTGATTGTGACAGTGGATAATGGAGTTGCTGGTCACGAGGCCATTAAACTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACTGACCACCATTCCATGCCGGAAACCCTGCCAGCTGCCTATGCCATTGTCCACCC
TGAGCATCCAGACGCGGACTATCCTTTCAAATATCTAGCTGGATGTGGAGTGGCCTTTAAGCTAGCTTGTGCCCTTTTAG
AAGAAGTGCAAGTGGAACTACTGGATTTGGTTGCTATCGGAACTATTGCCGATATGGTGAGTTTGACGGATGAAAACCGT
ATCATGGTTCAGTATGGTCTGGAAATGTTGGGGCATACTCAACGCATCGGTCTACAAGAAATGCTGGACATGGCTGGGAT
TGTTGCCAACGAAGTGACGGAAGAAACAGTTGGTTTTCAGATTGCCCCTCGTTTAAATGCCTTAGGCCGCTTGGACGACC
CCAATCCCGCCATTGATTTGTTGACTGGATTTGATGATGAGGAAGCACATGAGATTGCTCTTATGATTCACCAGAAAAAT
GAAGAGCGCAAGGAAATCGTGCAATCTATCTATGAAGAAGCCAAGACCATGGTGGTTCCTGAGAAGAAGGTACAAGTCCT
AGCCAAAGAAGGTTGGAATCCTGGAGTTCTAGGAATCGTAGCTGGGCGCTTGCTGGAAGAACTTGGACAGACAGTCATAG
TACTTAATATAGAAGACGGTCGTGCCAAGGGCAGTGCTCGTAGCGTGGAAGCTGTCGATATTTTTGAAGCCTTGGATCCC
CATCGAGAGCTCTTTATCGCCTTTGGAGGCCATGCTGGTGCGGCGGGCATGACGCTAGAAGTGGAGAAGCTTTCAGATTT
ATCTCAGGTCTTGGAAGACTATATCCGTGAAAAAGGTGCAGATGCTAGTGGTAAGAACAAGTTAAATCTAGATGAAGAGT
TGGATTTGGAGACACTTAGCTTAGAAACGGTCAAAAACTTTGAACGTTTGGCACCTTTTGGTATGGACAATCAGAAACCT
GTTTTTTACATCAGAGATTTCACTGTCGAGAGTGCTCGTAGTATGGGGGCGGGAAATACTCACCTCAAACTAAAAATTTC
TAAGGGAGAAGCTAGTTTTGAAGTGGTGGCCTTCGGACAAGGTAGATGGGCGACGGAGTTTGCTCAAACCAAGAATCTAG
AATTGGCAGTCACCCTGTCTGTCAACCAATGGAATGGCCAAACCGCTCTCCAGTTGATGATGGTGGATGCGCAAGTGGAA
GGCGTTCAACTCTTTAACATTCGTGGGAAGAATGCAGTCTTGCCAGAGGGAGTTCCAGTCTTGGACTTTTCTGGAGAATT
GCCAGAATTAGAGACCAGTGATGCTGTGGTTGTAAAAACCATTCCTGAGGATATTACCCTGCTGAAGACCATTTTTCAGG
AACAGAATTTCTCTGCTGTCTATTTCAAAAATGATATTGACAAGGCCTACTACCTAACAGGTTATGGGACTAGAGAGCAG
TTTGCCAAATTATACAAAACCATCTACCAATTCCCAGAGTTCGATATTCGCTATAAGCTCAAAGATTTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATCCAAGTCTTTGAGGAACTGGGCTTTGTAACTATCAAAGATGGTGTCA
TGACTGTCAATAAAGAAGCGCCGAAAAGGGAAATCGCTGAAAGTCAGATTTACCAAAATCTCAAACAAACTGTCAAAGAC
CAAGAAATGCTGGCGCTGGGGACAGTGCAAGAAATGTATAACTTTTTGATGAGAAAAGAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-735)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

94.595

100

0.946
  recJ Bacillus subtilis subsp. subtilis str. 168

36.917

100

0.385