Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilA   Type   Machinery gene
Locus tag   M9H69_RS04945 Genome accession   NZ_CP097843
Coordinates   952081..953349 (+) Length   422 a.a.
NCBI ID   WP_250316093.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 947081..958349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS04925 (M9H69_04925) - 947539..949527 (+) 1989 WP_250316090.1 ABC transporter permease -
  M9H69_RS04930 (M9H69_04930) - 949567..950262 (-) 696 WP_000136037.1 VIT family protein -
  M9H69_RS04935 (M9H69_04935) - 950468..951259 (+) 792 WP_250316091.1 HAD family hydrolase -
  M9H69_RS04940 (M9H69_04940) - 951259..952077 (+) 819 WP_250316092.1 Cof-type HAD-IIB family hydrolase -
  M9H69_RS04945 (M9H69_04945) pilA 952081..953349 (+) 1269 WP_250316093.1 signal recognition particle-docking protein FtsY Machinery gene
  M9H69_RS04950 (M9H69_04950) zwf 953394..954881 (-) 1488 WP_250316094.1 glucose-6-phosphate dehydrogenase -
  M9H69_RS04955 (M9H69_04955) - 955031..955771 (-) 741 WP_007516801.1 amino acid ABC transporter ATP-binding protein -
  M9H69_RS04960 (M9H69_04960) - 955771..957936 (-) 2166 WP_250316095.1 ABC transporter substrate-binding protein/permease -

Sequence


Protein


Download         Length: 422 a.a.        Molecular weight: 47269.29 Da        Isoelectric Point: 4.1712

>NTDB_id=596597 M9H69_RS04945 WP_250316093.1 952081..953349(+) (pilA) [Streptococcus oralis strain HP01]
MGLFDRLFGKKEEPKIEDVVKEALENLDLLEEVEENQTSIKETLAQEELSQVSTEEVVESETVEGRAQEEEFELEADETE
QRQEPEKFLEEENQETEEELASEVVEEEELPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIM
SDVGVQVASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGNYDEQIHFQDGLTVMLFVGVNGVGKTTSIGKLAH
RYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMA
ELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGE
KIDDIGEFNSENFMKGLLEGLI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=596597 M9H69_RS04945 WP_250316093.1 952081..953349(+) (pilA) [Streptococcus oralis strain HP01]
ATGGGATTATTTGACCGTCTATTCGGAAAAAAAGAAGAGCCGAAAATTGAAGATGTTGTAAAAGAAGCTCTGGAAAATCT
TGATTTGTTAGAAGAGGTTGAAGAAAATCAAACGTCTATCAAAGAAACCCTTGCTCAAGAAGAACTTTCTCAGGTGTCTA
CAGAAGAAGTGGTTGAGTCAGAAACAGTTGAGGGAAGGGCTCAGGAAGAGGAGTTTGAGTTAGAAGCTGATGAGACAGAG
CAAAGACAAGAGCCGGAAAAATTTCTAGAAGAAGAGAACCAAGAAACTGAAGAAGAACTAGCTTCTGAAGTAGTAGAAGA
AGAAGAACTTCCTCAGGTTGAAGAAACCGTACAGGAAAAATATGACCGCAGTCTCAAGAAAACCCGTACGGGATTCGGTG
CTCGCTTGAATGCCTTCTTTGCCAACTTCCGCTCTGTAGATGAAGAATTCTTCGAGGAATTAGAAGAATTGCTCATCATG
AGTGACGTTGGTGTGCAGGTCGCTTCAAACTTAACAGAAGAACTACGCTATGAAGCCAAATTAGAAAACGCTAAAAAGCC
TGACGCACTTCGCCGTGTCATTATCGAGAAATTGGTTGAGCTCTACGAAAAGGATGGCAACTACGATGAACAAATCCATT
TCCAAGATGGTTTGACAGTTATGCTCTTTGTTGGAGTCAATGGTGTTGGGAAAACAACTTCTATCGGGAAATTGGCTCAT
CGTTACAAACAAGCTGGAAAGAAAGTCATGTTGGTTGCGGCAGATACCTTCCGTGCGGGTGCTGTGGCTCAGCTAGCTGA
ATGGGGTCGACGTGTGGATGTTCCTGTTGTGACGGGACCTGAAAAGGCTGATCCGGCTAGCGTCGTCTTTGACGGGATGG
AACGTGCTGTAGCAGAAGGGATTGATATCCTTATGATTGATACAGCAGGTCGTCTGCAAAATAAGGACAACCTTATGGCT
GAGTTGGAAAAGATTGGTCGTATTATCAAGCGTGTCGTTCCTGAAGCACCTCATGAAACCTTCCTGGCACTTGATGCTTC
AACTGGACAGAATGCCCTGGTACAAGCTAAGGAATTTTCTAAGATAACACCATTGACAGGAATTGTTTTGACAAAAATTG
ACGGAACTGCCCGAGGTGGTGTTGTTCTGGCTATCCGCGAAGAACTCAATATCCCTGTGAAATTAATTGGTTTCGGTGAA
AAAATCGATGATATCGGGGAATTTAACTCAGAAAACTTTATGAAGGGTCTCTTAGAAGGCTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

37.288

97.867

0.365