Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K5K99_RS06050 Genome accession   NZ_CP081461
Coordinates   1131582..1133339 (-) Length   585 a.a.
NCBI ID   WP_227259367.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 36B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126582..1138339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS06030 (K5K99_06005) - 1126643..1127623 (+) 981 WP_114290096.1 aldo/keto reductase -
  K5K99_RS06035 (K5K99_06010) - 1127793..1128251 (+) 459 WP_114290097.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5K99_RS06040 (K5K99_06015) - 1128229..1129629 (+) 1401 WP_114290098.1 DHA2 family efflux MFS transporter permease subunit -
  K5K99_RS06045 (K5K99_06020) rcrQ 1129807..1131582 (-) 1776 WP_114290099.1 ABC transporter ATP-binding protein Regulator
  K5K99_RS06050 (K5K99_06025) rcrP 1131582..1133339 (-) 1758 WP_227259367.1 ABC transporter ATP-binding protein Regulator
  K5K99_RS06055 (K5K99_06030) - 1133574..1134614 (-) 1041 WP_114290101.1 HAMP domain-containing sensor histidine kinase -
  K5K99_RS06060 (K5K99_06035) - 1134611..1135285 (-) 675 WP_167798790.1 response regulator transcription factor -
  K5K99_RS06065 (K5K99_06040) - 1135472..1136239 (+) 768 WP_207057349.1 IclR family transcriptional regulator -
  K5K99_RS06070 (K5K99_06045) kduI 1136396..1137232 (+) 837 WP_227259368.1 5-dehydro-4-deoxy-D-glucuronate isomerase -
  K5K99_RS06075 (K5K99_06050) - 1137248..1138036 (+) 789 WP_207029164.1 gluconate 5-dehydrogenase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64543.03 Da        Isoelectric Point: 7.3929

>NTDB_id=596595 K5K99_RS06050 WP_227259367.1 1131582..1133339(-) (rcrP) [Vagococcus fluvialis strain 36B2]
MVKIFRYLSKTEYALAGVSLLFIIAQVWLDLKLPDYMNEITKLVQTEGSEMSEILSAGGMMLLCAVTSLLSAVIVAVIVA
KIAANYSARLREKLFGKVQSLSTEEINHFSIPSLITRTTNDITQVQMLIVMGLQAMVKAPILAVWAILKISNKSWQWTFA
TGVAIVVLLVFVITCMILALPKMKKIQGYTDKLNSVTRENLTGLQVVRAYNAEDYQEKKFDDANETLMRTNVFTNRTFAF
LMPGIQLVMSGLTLSIYWLGASLINSAALENKLNLFSDMVVFSSYAMQVIMAFMMLVMIFIMIPRASVSAKRILEVLDSK
SALVDGKLTGENSAVKGKIEFKHVNFKYPQADGMALNDINFTVTQGETLAIIGATGSGKTTLVNLIARLYDTTSGEILVD
DINVKDYSHAHLNNKLGFVTQKATLFSGTIASNVAFGDNGNPNKLDSDIVDSIYTAQAAEFVEKMPLGYDHAVAQNGGNL
SGGQKQRLSIARAINRRSEILIFDDSFSALDYKTDRNLRESLKKDCKDTTKIIVAQRIGTIRNADTILVLDEGQLVGKGT
HNELMENNPVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=596595 K5K99_RS06050 WP_227259367.1 1131582..1133339(-) (rcrP) [Vagococcus fluvialis strain 36B2]
ATGGTTAAAATATTTAGATATTTAAGTAAAACGGAATACGCCCTTGCTGGAGTTAGTTTACTTTTTATCATAGCTCAGGT
TTGGTTAGATTTAAAACTGCCTGACTATATGAATGAAATCACTAAACTTGTTCAAACTGAAGGAAGTGAAATGAGTGAAA
TCCTCTCCGCTGGTGGGATGATGTTACTCTGTGCTGTTACTAGTTTGTTGAGTGCTGTCATTGTAGCTGTGATTGTCGCA
AAAATTGCTGCTAATTACAGTGCTAGATTACGTGAAAAATTATTTGGAAAAGTACAATCATTATCAACTGAGGAAATTAA
TCATTTCTCTATTCCAAGTTTAATTACCCGTACAACAAATGATATTACTCAAGTTCAAATGCTAATTGTAATGGGACTTC
AAGCAATGGTTAAAGCTCCTATTTTAGCAGTCTGGGCAATTCTGAAGATTTCTAACAAAAGTTGGCAATGGACATTTGCC
ACTGGTGTTGCTATTGTCGTTCTTTTAGTTTTTGTGATTACGTGTATGATTTTAGCACTGCCAAAAATGAAAAAAATTCA
AGGATATACTGATAAACTTAATTCAGTAACTCGTGAAAATTTAACTGGTTTACAAGTAGTTAGGGCATATAATGCTGAGG
ATTATCAAGAGAAAAAATTTGATGATGCCAATGAAACCTTAATGAGAACAAACGTCTTCACCAATCGAACTTTCGCCTTT
TTAATGCCTGGTATTCAATTAGTCATGAGTGGTTTAACTCTTTCTATTTACTGGCTAGGTGCATCATTAATCAATAGTGC
AGCACTTGAAAATAAATTAAATCTATTTTCTGATATGGTTGTTTTCTCTTCATATGCCATGCAAGTTATTATGGCCTTTA
TGATGTTAGTTATGATTTTTATTATGATTCCAAGAGCTAGCGTTTCTGCTAAGCGTATTTTAGAAGTTCTAGACTCTAAA
TCAGCTCTTGTTGATGGAAAATTAACAGGAGAAAATTCAGCGGTTAAAGGTAAAATTGAATTTAAACATGTTAACTTCAA
ATACCCACAAGCTGATGGTATGGCTCTTAATGACATTAACTTTACTGTGACCCAAGGTGAAACTTTAGCAATTATTGGTG
CAACTGGTAGCGGAAAAACAACTTTAGTCAATTTAATTGCAAGGCTTTATGACACAACAAGTGGTGAGATTTTAGTTGAT
GACATTAATGTTAAAGATTACTCTCATGCTCATTTAAACAACAAGCTTGGTTTTGTGACTCAAAAAGCGACTCTCTTTAG
TGGAACAATTGCTAGTAACGTGGCTTTTGGAGATAATGGCAATCCCAATAAATTAGATTCAGATATTGTTGATTCTATAT
ACACTGCTCAAGCAGCTGAATTTGTTGAAAAAATGCCTTTAGGCTATGATCATGCTGTTGCTCAAAATGGTGGTAACTTA
TCTGGAGGACAAAAACAACGTTTATCTATAGCTAGAGCCATTAATCGTCGCTCAGAAATTTTAATTTTTGATGATTCGTT
CTCAGCACTTGATTACAAAACAGATCGTAATTTAAGAGAAAGTCTTAAAAAAGATTGTAAAGACACAACTAAAATTATCG
TTGCTCAGCGTATTGGAACCATTAGAAATGCCGATACTATTTTAGTTCTTGATGAAGGTCAATTAGTTGGCAAAGGTACT
CATAATGAGTTAATGGAAAACAACCCTGTTTATCAAGAAATTGCCTACTCACAACTTTCTAAGGAGGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.678

100

0.526