Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K5K99_RS06045 Genome accession   NZ_CP081461
Coordinates   1129807..1131582 (-) Length   591 a.a.
NCBI ID   WP_114290099.1    Uniprot ID   A0A369AW24
Organism   Vagococcus fluvialis strain 36B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124807..1136582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS06020 (K5K99_05995) - 1125175..1126077 (+) 903 WP_114290094.1 NAD-dependent epimerase/dehydratase family protein -
  K5K99_RS06025 (K5K99_06000) - 1126094..1126540 (-) 447 WP_114290095.1 MerR family transcriptional regulator -
  K5K99_RS06030 (K5K99_06005) - 1126643..1127623 (+) 981 WP_114290096.1 aldo/keto reductase -
  K5K99_RS06035 (K5K99_06010) - 1127793..1128251 (+) 459 WP_114290097.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5K99_RS06040 (K5K99_06015) - 1128229..1129629 (+) 1401 WP_114290098.1 DHA2 family efflux MFS transporter permease subunit -
  K5K99_RS06045 (K5K99_06020) rcrQ 1129807..1131582 (-) 1776 WP_114290099.1 ABC transporter ATP-binding protein Regulator
  K5K99_RS06050 (K5K99_06025) rcrP 1131582..1133339 (-) 1758 WP_227259367.1 ABC transporter ATP-binding protein Regulator
  K5K99_RS06055 (K5K99_06030) - 1133574..1134614 (-) 1041 WP_114290101.1 HAMP domain-containing sensor histidine kinase -
  K5K99_RS06060 (K5K99_06035) - 1134611..1135285 (-) 675 WP_167798790.1 response regulator transcription factor -
  K5K99_RS06065 (K5K99_06040) - 1135472..1136239 (+) 768 WP_207057349.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65776.75 Da        Isoelectric Point: 5.5576

>NTDB_id=596594 K5K99_RS06045 WP_114290099.1 1129807..1131582(-) (rcrQ) [Vagococcus fluvialis strain 36B2]
MTKEKSKKKNNFSGNWKKLIAYSKRYMPIIIIALIASMIGSVLTLIGPDKLSEITDLITQGIMTGIDLDEVKRIGILLVF
FYGFGSLLSIIQGFIMASVTQIISRNLREDISKKINRLPLAYFNRNSTGDVLSRVTNDVDTIGQTLNQSIGTLVSAITLL
FGSLFMMLKTNVTLTATAVGATIIGFVLMSLIMSKSQKYFSQQQNDLGRINSHVEEIYTGQSVVKIYNAEESNKKVFDEM
NESLKTSGFKAQCLSGLMMPIMQFIGNFGYVAVCIVGAVLANNGTISFGVIVAFILYVRYFTQPLSQIAQSFQSLQSTSA
ASKRVFEFLGEEEMSDESHKEDTLDKATGEVSFNHVSFGYTPEKKVIKDFSAEVKPGQKIAIVGPTGAGKTTLINLLMRF
YEVDSGDIKIDGIKTKDLPRHVVNNQFSMILQDTWLFEGTIKENIVYNMTGITEEEIQKACESVGIHHFIETLPEKYDTI
LNDQLSLSSGQKQQLTIARAIVDNKPMLILDEATSSVDTRTEIQIQSSMDQLMENRTSFIIAHRLSTIRNADVILVMKDG
DIIEQGNHDDLIAQNGFYSELYNSQFEEKIA

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=596594 K5K99_RS06045 WP_114290099.1 1129807..1131582(-) (rcrQ) [Vagococcus fluvialis strain 36B2]
ATGACTAAAGAAAAATCAAAAAAGAAAAATAACTTTAGTGGTAATTGGAAAAAACTAATTGCCTACTCTAAAAGATATAT
GCCTATTATTATCATTGCGCTAATTGCCTCTATGATTGGTTCTGTTCTAACTTTAATTGGGCCAGACAAATTATCAGAAA
TTACAGATTTAATCACTCAAGGAATTATGACTGGTATTGATTTAGATGAAGTCAAAAGAATTGGTATCCTGCTAGTCTTT
TTCTATGGATTTGGATCTCTTCTTTCAATCATTCAAGGTTTTATTATGGCTAGCGTGACACAAATTATCTCTCGTAATTT
AAGAGAAGATATTTCGAAAAAAATCAATCGATTACCTCTAGCTTATTTTAATAGAAATTCTACTGGAGATGTTTTATCTC
GTGTAACAAATGATGTTGACACAATTGGCCAAACTCTAAACCAAAGCATCGGAACTTTAGTTTCTGCCATTACGTTACTA
TTTGGTTCTCTATTTATGATGTTAAAAACTAACGTCACACTAACTGCTACAGCTGTTGGAGCTACTATTATTGGATTTGT
TTTAATGAGTTTAATTATGAGTAAATCTCAAAAATACTTCTCACAACAACAAAATGATTTAGGACGCATTAACAGTCACG
TTGAAGAAATTTATACAGGTCAATCAGTGGTTAAAATTTATAATGCTGAAGAATCTAATAAAAAAGTTTTTGATGAGATG
AATGAAAGTCTAAAAACAAGTGGTTTTAAAGCACAATGTTTATCTGGATTAATGATGCCAATTATGCAATTTATAGGAAA
TTTTGGTTATGTTGCTGTTTGTATTGTAGGGGCTGTTCTAGCCAATAACGGAACAATTAGTTTTGGTGTCATTGTAGCTT
TCATCCTTTATGTACGCTACTTTACTCAACCACTTAGTCAAATTGCTCAATCATTCCAATCATTACAGTCTACTTCTGCT
GCAAGTAAACGTGTTTTTGAATTTTTAGGCGAAGAAGAAATGTCTGATGAATCTCATAAAGAAGATACATTAGATAAAGC
AACCGGTGAAGTCAGCTTTAATCATGTCAGTTTTGGCTATACTCCTGAGAAAAAAGTAATAAAAGATTTTTCTGCCGAAG
TAAAACCTGGACAAAAAATTGCTATTGTTGGGCCAACTGGTGCTGGTAAAACAACTTTAATTAATTTATTAATGAGATTT
TACGAAGTAGATAGTGGGGATATTAAAATTGATGGTATTAAAACAAAAGACTTACCACGTCATGTTGTAAACAATCAATT
TAGTATGATTCTTCAAGATACATGGTTATTTGAAGGAACCATTAAAGAAAATATTGTTTATAATATGACTGGTATTACAG
AGGAAGAAATTCAAAAAGCCTGTGAATCTGTCGGTATTCACCACTTCATTGAAACGCTACCTGAAAAATACGATACTATT
TTAAATGACCAATTAAGCCTATCATCTGGTCAAAAACAGCAGCTAACAATTGCCCGAGCAATTGTTGACAACAAACCTAT
GTTAATTCTTGATGAAGCAACAAGTTCAGTTGATACAAGAACAGAGATACAAATTCAATCTTCAATGGATCAATTAATGG
AAAATAGAACATCCTTCATTATTGCTCACCGTTTATCTACTATTAGAAACGCTGATGTGATTTTAGTTATGAAAGATGGC
GATATTATTGAACAAGGAAATCACGATGATTTAATTGCTCAAAATGGTTTCTATTCAGAACTTTATAATAGCCAATTTGA
AGAAAAAATAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-305)

ABC transporter (ABC_tran)

(368-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A369AW24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.559

99.323

0.562