Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K5K99_RS00265 Genome accession   NZ_CP081461
Coordinates   35564..37375 (-) Length   603 a.a.
NCBI ID   WP_207027956.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 36B2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 30564..42375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS00240 (K5K99_00240) - 31702..32589 (-) 888 WP_227258906.1 RluA family pseudouridine synthase -
  K5K99_RS00245 (K5K99_00245) - 32592..33401 (-) 810 WP_114289918.1 NAD kinase -
  K5K99_RS00250 (K5K99_00250) - 33398..34069 (-) 672 WP_206971854.1 GTP pyrophosphokinase family protein -
  K5K99_RS00255 (K5K99_00255) - 34211..34807 (+) 597 WP_227258907.1 CYTH domain-containing protein -
  K5K99_RS00260 (K5K99_00260) - 34902..35513 (+) 612 WP_086341171.1 DsbA family protein -
  K5K99_RS00265 (K5K99_00265) pepF 35564..37375 (-) 1812 WP_207027956.1 oligoendopeptidase F Regulator
  K5K99_RS00270 (K5K99_00270) - 37401..38537 (-) 1137 WP_207027957.1 competence protein CoiA -
  K5K99_RS00275 (K5K99_00275) queG 38641..39786 (+) 1146 WP_227258908.1 tRNA epoxyqueuosine(34) reductase QueG -
  K5K99_RS00280 (K5K99_00280) - 39839..41776 (-) 1938 WP_227258909.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68820.88 Da        Isoelectric Point: 4.6549

>NTDB_id=596578 K5K99_RS00265 WP_207027956.1 35564..37375(-) (pepF) [Vagococcus fluvialis strain 36B2]
MSETKQLPNRSDLTEKETWDLTPIFESDAAFDTAFEALTKKLEEAPSYQGTLKNGADSFLKAIDYLLSVYREVEKIYVYS
HLKNDQDTSNTTYQGLYARASSLAAQSGAALAWFQPEVLTLSDEEIDGYFAENKDLEVYRYFVKQMTDERAHVLSAKEEE
LLANASEVLSASSDTFSVLNNADLKFPIVKDENGHDVELSHGLYGQLMESTNREVREAAFKGMYSVYEQFRNTFASTLTA
NVKKHNFNAKVRNFSSAREAALSANHIPESVYDTLLDVVDKNLPLLHRYVALRKKLLNVDTLHMYDMYTPVLGDAPIKHS
YEEAKEISLKGLEPLGEEYIEIVKEAYADRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHDSLNHLYTLVHEMGHSVHS
YYTRKTQPYVYGDYSIFLAEIASTTNENLLTEYLLKTETDPKVRAFVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSEFLSDYYADLNAKYYGPSVEKDPEIAYEWSRIPHFYYNYYVFQYSTGFSAAAALADKILKGEENALENYLGFLKAG
SSDYPIEVMKKAGVDMTQAAYIEDAMKVFEERLNELEALVETF

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=596578 K5K99_RS00265 WP_207027956.1 35564..37375(-) (pepF) [Vagococcus fluvialis strain 36B2]
ATGAGTGAAACAAAACAATTACCAAATCGTTCAGATTTAACAGAAAAAGAAACATGGGACTTAACACCAATTTTTGAAAG
TGATGCAGCTTTTGATACGGCTTTTGAAGCTTTAACAAAAAAATTAGAAGAAGCACCAAGCTATCAAGGAACGTTAAAAA
ATGGAGCAGATAGCTTCTTGAAAGCTATCGACTATTTATTAAGTGTTTACCGTGAAGTTGAAAAAATTTATGTGTATTCA
CATTTAAAAAATGACCAAGATACAAGTAACACAACTTATCAAGGTCTATATGCAAGAGCAAGTAGTTTAGCAGCTCAATC
AGGAGCAGCCCTAGCTTGGTTTCAACCAGAAGTTTTAACTTTATCAGATGAAGAAATTGATGGTTACTTTGCTGAAAATA
AAGACTTAGAAGTTTATCGTTATTTTGTTAAACAAATGACTGATGAAAGAGCACACGTTTTATCAGCGAAAGAAGAAGAA
TTATTAGCTAATGCTAGTGAAGTGTTATCAGCTTCAAGTGATACATTCTCAGTTTTAAACAATGCGGATTTAAAATTCCC
AATTGTTAAGGATGAAAATGGTCATGATGTTGAGTTATCACATGGTTTATATGGTCAATTAATGGAAAGCACTAACCGTG
AAGTTAGAGAAGCAGCCTTTAAAGGTATGTACAGTGTGTATGAACAATTTAGAAATACTTTTGCAAGTACTTTAACAGCT
AATGTTAAAAAACATAACTTTAATGCTAAGGTTAGAAACTTCTCTTCAGCTCGCGAAGCAGCTTTAAGTGCTAACCATAT
TCCAGAATCAGTTTATGATACATTACTTGATGTAGTTGATAAAAACTTACCATTATTACATCGTTATGTGGCTTTACGTA
AAAAATTACTTAATGTTGATACCTTACATATGTACGATATGTATACACCAGTTTTAGGAGATGCTCCAATTAAACATTCT
TATGAGGAAGCAAAAGAAATTTCTCTTAAAGGATTAGAGCCACTTGGTGAAGAGTATATTGAAATTGTTAAGGAAGCCTA
TGCAGATCGCTGGATTGACGTCGTTGAAAATAAAGGAAAACGTAGTGGTGCCTACTCATCTGGAAGTTACGACACAAAAC
CTTATATTCTTTTAAACTGGCATGATAGTTTAAATCATCTGTATACATTAGTTCATGAGATGGGACATAGTGTTCATAGT
TATTACACACGTAAAACACAACCTTATGTGTATGGTGATTATTCAATTTTCCTTGCAGAGATTGCTTCAACAACAAATGA
AAACTTATTAACTGAGTATTTATTAAAAACAGAAACAGATCCTAAAGTCCGTGCCTTTGTCTTAAACCACTATTTAGATG
GATTCAAAGGAACAATCTTTAGACAAACTCAATTTGCTGAATTTGAACATTTCATTCACACAGAAGATGCTAAAGGAACT
CCTCTAACAAGTGAATTCTTAAGTGATTATTATGCTGATTTAAATGCTAAATATTATGGACCTTCAGTTGAAAAAGACCC
AGAAATTGCTTATGAGTGGAGTCGTATTCCTCATTTCTATTACAATTACTATGTCTTCCAATACTCAACAGGATTTTCTG
CAGCAGCAGCTTTAGCAGATAAAATTCTTAAGGGTGAGGAAAATGCTTTAGAAAACTATTTAGGATTCTTAAAAGCAGGA
AGTAGTGATTACCCAATTGAAGTGATGAAAAAAGCTGGTGTTGATATGACACAAGCTGCATATATTGAAGATGCGATGAA
AGTCTTTGAAGAAAGATTAAACGAATTAGAAGCATTAGTAGAAACATTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.481

98.342

0.546