Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M9H69_RS00440 Genome accession   NZ_CP097843
Coordinates   67498..68268 (+) Length   256 a.a.
NCBI ID   WP_084938702.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62498..73268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS00415 (M9H69_00415) - 62912..63406 (+) 495 WP_002876632.1 carbonic anhydrase -
  M9H69_RS00420 (M9H69_00420) - 63620..64588 (+) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  M9H69_RS00425 (M9H69_00425) - 64708..65145 (+) 438 WP_250315621.1 CoA-binding protein -
  M9H69_RS00430 (M9H69_00430) - 65173..66183 (-) 1011 WP_250315622.1 YeiH family protein -
  M9H69_RS00435 (M9H69_00435) - 66332..67501 (+) 1170 WP_000366366.1 pyridoxal phosphate-dependent aminotransferase -
  M9H69_RS00440 (M9H69_00440) recO 67498..68268 (+) 771 WP_084938702.1 DNA repair protein RecO Machinery gene
  M9H69_RS00445 (M9H69_00445) plsX 68265..69257 (+) 993 WP_247941856.1 phosphate acyltransferase PlsX -
  M9H69_RS00450 (M9H69_00450) - 69261..69497 (+) 237 WP_000136450.1 acyl carrier protein -
  M9H69_RS00455 (M9H69_00455) - 69941..70132 (+) 192 WP_000180812.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  M9H69_RS00460 (M9H69_00460) - 70157..70339 (+) 183 WP_009729537.1 Blp family class II bacteriocin -
  M9H69_RS00465 (M9H69_00465) - 70343..70567 (+) 225 WP_080585587.1 bacteriocin immunity protein -
  M9H69_RS00470 (M9H69_00470) - 70639..70827 (+) 189 WP_195217117.1 hypothetical protein -
  M9H69_RS00475 (M9H69_00475) - 70852..71061 (+) 210 WP_000869800.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29757.17 Da        Isoelectric Point: 5.0210

>NTDB_id=596557 M9H69_RS00440 WP_084938702.1 67498..68268(+) (recO) [Streptococcus oralis strain HP01]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGIGLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQDLRKFIDQIYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=596557 M9H69_RS00440 WP_084938702.1 67498..68268(+) (recO) [Streptococcus oralis strain HP01]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGTTAGTCAAGATTTT
TACCGAGCAAGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAGTCCAAACTGGCCCCTGTTATTCAGCCCTTGG
TATTGGCTCGGTTTCTCTTGCGAATCAATGATGATGGACTCAGCTATATCGAAGACTACCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTTATGGCTTATGCGACCTATGTGGCTGCCCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCCTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGATTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACCCGATTTGGAATTGGGCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCTTTTGACTTTTCTTTTAAATATGGAGCCTGCCTCTGCCCAGAGCATTATCATGAAGATGAGAGACGTTGTCATCT
GAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACCTTGGAGACTATTTCGCTCAAGCCTG
AAATCAAGCAAGACTTGCGCAAGTTTATAGACCAAATCTACGAAGAGTATGTTGGAATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCCGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.484

100

0.965