Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AW27_RS25920 Genome accession   NZ_CP097800
Coordinates   5832585..5834672 (-) Length   695 a.a.
NCBI ID   WP_037930093.1    Uniprot ID   -
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5827585..5839672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS25900 (AW27_025860) pgl 5827966..5828748 (-) 783 WP_037930080.1 6-phosphogluconolactonase -
  AW27_RS25905 (AW27_025865) opcA 5828872..5829903 (-) 1032 WP_037930084.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  AW27_RS25910 (AW27_025870) zwf 5829900..5831426 (-) 1527 WP_037930087.1 glucose-6-phosphate dehydrogenase -
  AW27_RS25915 (AW27_025875) tal 5831432..5832550 (-) 1119 WP_037930090.1 transaldolase -
  AW27_RS25920 (AW27_025880) recP/tkt 5832585..5834672 (-) 2088 WP_037930093.1 transketolase Machinery gene
  AW27_RS25925 (AW27_025885) - 5834997..5835944 (+) 948 WP_078557166.1 heme o synthase -
  AW27_RS25930 (AW27_025890) - 5835969..5836328 (+) 360 WP_236647869.1 hypothetical protein -
  AW27_RS25935 (AW27_025895) - 5836457..5837557 (+) 1101 WP_037930098.1 amidohydrolase family protein -
  AW27_RS25940 (AW27_025900) - 5837588..5838547 (-) 960 WP_052031355.1 heme A synthase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74760.68 Da        Isoelectric Point: 5.2976

>NTDB_id=596543 AW27_RS25920 WP_037930093.1 5832585..5834672(-) (recP/tkt) [Streptomyces sp. PCS3-D2 isolate P1]
MSTKPTTTELEWTELDQRAVDTARILAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPEWVGRDRFVLSAGHSS
LTLYTQLYLGGFGLELDDLKSFRTWGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPQAAPGTSPF
DHMVYAIAGDGCLQEGISHEASALAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTMKRYEAYGWHVQRVEQQENGDLDP
KALFAALQAAKAVTDRPSFIAARSIIAWPAPHAQNTEAAHGSALGDDEVAATKRVLGFDPEQTFEVADEVIAHTRKALDR
GREAKAAWEKDFSAWRTANPERAAEFDRINANELPAGWEEQLPVFEAGTSLATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKDSSFLPVGNPLPEADPYGRTIHFGIREHAMAAAMNGIALHGHTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLTIVRPADANETAIAWREILKRHTKVFGKGTPHGLALTRQGVPTYEADE
NTVKGGYVRFEAEGGDAQVVLIGTGSEVHVAVEAREQLQAAGIPTRVVSMPSVEWFEEQDQAYKDSVLPPSVKARVAVEA
GIGLTWHRYVGDAGRIVSLEHFGASADAKVLFREFGFTPEAVAAAARDSLAAAAR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=596543 AW27_RS25920 WP_037930093.1 5832585..5834672(-) (recP/tkt) [Streptomyces sp. PCS3-D2 isolate P1]
GTGAGCACCAAGCCGACCACCACAGAGCTCGAGTGGACCGAACTGGACCAGCGGGCCGTCGACACCGCCCGCATCCTGGC
CGCCGACGCGGTCCAGAAGGTCGGAAACGGCCACCCCGGTACGGCGATGAGCCTGGCGCCCGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACCCCGAGTGGGTGGGCCGCGACCGTTTCGTGCTCTCCGCGGGGCACTCGTCC
CTGACCCTCTACACCCAGCTGTACCTGGGCGGGTTCGGGCTCGAACTGGACGACCTGAAGTCCTTCCGCACCTGGGGCTC
CAAGACCCCGGGCCACCCGGAGTACGGCCACACGGCCGGCGTCGAGACCACCACCGGCCCCCTCGGGCAGGGTGTCGCCA
ACGCGGTGGGCATGGCCATGGCCGCCCGCTACGAGCGCGGCCTCTTCGACCCGCAGGCGGCCCCGGGCACCTCCCCGTTC
GACCACATGGTCTACGCGATCGCGGGCGACGGGTGCCTCCAGGAGGGCATCTCCCACGAGGCGTCCGCGCTGGCCGGCCA
CCAGAAGCTCGGCAACCTCGTCCTCCTCTGGGACGACAACCACATCTCCATCGAGGGTGACACGGAGACGGCCGTCTCCG
AGGACACCATGAAGCGCTACGAGGCCTACGGCTGGCACGTCCAGCGCGTCGAGCAGCAGGAGAACGGCGACCTCGACCCG
AAGGCCCTGTTCGCCGCGCTCCAGGCCGCCAAGGCCGTCACGGACCGGCCGTCCTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCCGCCCCGCACGCCCAGAACACCGAGGCCGCCCACGGCTCGGCACTCGGCGACGACGAGGTCGCGGCCACCAAGC
GCGTGCTCGGCTTCGACCCGGAGCAGACCTTCGAGGTCGCCGACGAGGTCATCGCCCACACCCGCAAGGCGCTGGACCGG
GGCCGCGAGGCCAAGGCCGCCTGGGAGAAGGACTTCTCCGCCTGGCGCACCGCCAACCCTGAGCGCGCCGCCGAGTTCGA
CCGCATCAACGCGAACGAACTGCCCGCGGGCTGGGAGGAGCAGCTCCCCGTCTTCGAGGCCGGCACGTCCCTCGCCACCC
GCGCCGCCTCCGGCAAGGTGCTCCAGGCCCTCGGCGCGGTCATCCCGGAGCTGTGGGGCGGCTCGGCCGACCTGGCCGGC
TCCAACAACACCACCATCGACAAGGACTCCTCGTTCCTTCCGGTGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
CACCATCCACTTCGGCATCCGCGAGCACGCCATGGCCGCCGCCATGAACGGCATCGCGCTGCACGGCCACACCCGTATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTGCGCCTGTCCGCCCTGATGCACCTGCCGGTGACC
TACGTGTGGACGCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTGGCCTCGCTGCG
CGCCATCCCGGGCCTGACGATCGTCCGCCCGGCCGACGCCAACGAGACCGCGATCGCCTGGCGCGAGATCCTCAAGCGCC
ACACGAAGGTGTTCGGCAAGGGCACCCCGCACGGTCTGGCCCTCACCCGTCAGGGCGTGCCGACGTACGAGGCCGACGAG
AACACCGTCAAGGGCGGCTACGTGCGCTTCGAGGCGGAAGGCGGCGACGCCCAGGTCGTCCTCATCGGCACCGGCTCCGA
GGTGCACGTGGCCGTCGAGGCCCGCGAGCAGCTCCAGGCCGCCGGCATCCCCACCCGCGTGGTCTCGATGCCGTCCGTGG
AGTGGTTCGAGGAGCAGGACCAGGCGTACAAGGACAGCGTCCTGCCGCCCTCCGTCAAGGCCCGGGTCGCGGTCGAGGCG
GGCATCGGCCTGACCTGGCACCGCTACGTCGGTGACGCGGGCCGGATCGTGTCGCTGGAGCACTTCGGCGCCTCGGCCGA
TGCGAAGGTCCTCTTCCGCGAGTTCGGTTTCACGCCGGAGGCCGTCGCCGCCGCCGCCCGGGACTCCCTCGCCGCCGCCG
CGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.838

97.554

0.437