Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J68_RS02100 Genome accession   NZ_AP018773
Coordinates   414564..415217 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 409564..420217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS02100 (CHBNIII2_03960) sxy/tfoX 414564..415217 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  K6J68_RS02105 (CHBNIII2_03970) recA 415591..416655 (+) 1065 WP_005651076.1 recombinase RecA Machinery gene
  K6J68_RS02110 (CHBNIII2_03980) recX 416734..417192 (+) 459 WP_005651075.1 recombination regulator RecX -
  K6J68_RS02115 crcB 417189..417575 (-) 387 WP_005651074.1 fluoride efflux transporter CrcB -
  K6J68_RS02120 (CHBNIII2_04000) - 417575..418393 (-) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  K6J68_RS02125 (CHBNIII2_04010) - 418796..419800 (+) 1005 WP_005688262.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=59654 K6J68_RS02100 WP_005692773.1 414564..415217(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59654 K6J68_RS02100 WP_005692773.1 414564..415217(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment