Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K4756_RS17695 Genome accession   NZ_CP081458
Coordinates   3433065..3433754 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3428065..3438754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS17660 (K4756_17575) flgN 3428245..3428727 (-) 483 WP_014481048.1 flagellar protein FlgN -
  K4756_RS17665 (K4756_17580) flgM 3428743..3429009 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  K4756_RS17670 (K4756_17585) yvyF 3429090..3429509 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  K4756_RS17675 (K4756_17590) comFC 3429583..3430305 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  K4756_RS17680 (K4756_17595) comFB 3430269..3430565 (-) 297 WP_015483764.1 late competence protein ComFB -
  K4756_RS17685 (K4756_17600) comFA 3430625..3432016 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  K4756_RS17690 (K4756_17605) fakBA 3432122..3432967 (-) 846 WP_003227986.1 DegV family protein -
  K4756_RS17695 (K4756_17610) degU 3433065..3433754 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  K4756_RS17700 (K4756_17615) degS 3433837..3434994 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  K4756_RS17705 (K4756_17620) yvyE 3435211..3435864 (+) 654 WP_003227979.1 YigZ family protein -
  K4756_RS17710 (K4756_17625) tagV 3435864..3437039 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  K4756_RS17715 (K4756_17630) tagO 3437112..3438188 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=596531 K4756_RS17695 WP_003219701.1 3433065..3433754(-) (degU) [Bacillus subtilis subsp. subtilis strain ps4060]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=596531 K4756_RS17695 WP_003219701.1 3433065..3433754(-) (degU) [Bacillus subtilis subsp. subtilis strain ps4060]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1