Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K4756_RS12475 Genome accession   NZ_CP081458
Coordinates   2428535..2429302 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2423535..2434302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS12455 (K4756_12385) ppsR 2423709..2424521 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  K4756_RS12460 (K4756_12390) ccpN 2424547..2425185 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  K4756_RS12465 (K4756_12395) glyS 2425318..2427357 (-) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  K4756_RS12470 (K4756_12400) glyQ 2427350..2428237 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  K4756_RS12475 (K4756_12405) recO 2428535..2429302 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  K4756_RS12480 (K4756_12410) yqzL 2429339..2429482 (-) 144 WP_003230053.1 YqzL family protein -
  K4756_RS12485 (K4756_12415) era 2429630..2430535 (-) 906 WP_003230051.1 GTPase Era -
  K4756_RS12490 (K4756_12420) - 2430516..2430926 (-) 411 WP_003230049.1 cytidine deaminase -
  K4756_RS12495 (K4756_12425) unpK 2431045..2431416 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  K4756_RS12500 (K4756_12430) ybeY 2431397..2431870 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  K4756_RS12505 (K4756_12435) pgpH 2431871..2434006 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=596512 K4756_RS12475 WP_015384118.1 2428535..2429302(-) (recO) [Bacillus subtilis subsp. subtilis strain ps4060]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=596512 K4756_RS12475 WP_015384118.1 2428535..2429302(-) (recO) [Bacillus subtilis subsp. subtilis strain ps4060]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992