Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K4756_RS07785 Genome accession   NZ_CP081458
Coordinates   1481148..1481426 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476148..1486426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS07765 (K4756_07725) panEB 1477336..1478246 (+) 911 Protein_1472 ketopantoate reductase family protein -
  K4756_RS07770 (K4756_07730) ampS 1478280..1479512 (-) 1233 WP_015383558.1 aminopeptidase -
  K4756_RS07775 (K4756_07735) ykpC 1479622..1479756 (-) 135 WP_003238865.1 protein YkpC -
  K4756_RS07780 (K4756_07740) mreBH 1479857..1480864 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  K4756_RS07785 (K4756_07745) abrB 1481148..1481426 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  K4756_RS07790 (K4756_07750) kinC 1481616..1482902 (+) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  K4756_RS07795 (K4756_07755) ykqA 1482918..1483745 (+) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  K4756_RS07800 (K4756_07760) ktrC 1483808..1484472 (+) 665 Protein_1479 Ktr system potassium transporter KtrC -
  K4756_RS07805 (K4756_07765) ade 1484628..1486361 (+) 1734 WP_015383561.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=596497 K4756_RS07785 WP_003244728.1 1481148..1481426(+) (abrB) [Bacillus subtilis subsp. subtilis strain ps4060]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=596497 K4756_RS07785 WP_003244728.1 1481148..1481426(+) (abrB) [Bacillus subtilis subsp. subtilis strain ps4060]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576