Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K4756_RS00245 Genome accession   NZ_CP081458
Coordinates   44294..44584 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39294..49584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS00205 (K4756_00205) darA 39317..39646 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  K4756_RS00210 (K4756_00210) yaaR 39659..40099 (+) 441 WP_015382556.1 YaaR family protein -
  K4756_RS00215 (K4756_00215) holB 40111..41100 (+) 990 WP_015482689.1 DNA polymerase III subunit delta' -
  K4756_RS00220 (K4756_00220) ricT 41103..41930 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  K4756_RS00225 (K4756_00225) yabA 41945..42304 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  K4756_RS00230 (K4756_00230) trmNF 42363..43106 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K4756_RS00235 (K4756_00235) yazA 43093..43392 (+) 300 WP_014475567.1 GIY-YIG nuclease family protein -
  K4756_RS00240 (K4756_00240) rsmI 43367..44245 (+) 879 WP_041517603.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K4756_RS00245 (K4756_00245) abrB 44294..44584 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  K4756_RS00250 (K4756_00250) metG 45079..47073 (+) 1995 WP_015382561.1 methionine--tRNA ligase -
  K4756_RS00255 (K4756_00255) dayD 47153..47920 (+) 768 WP_014475570.1 TatD family hydrolase -
  K4756_RS00260 (K4756_00260) yabE 48076..49389 (+) 1314 WP_015382562.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=596468 K4756_RS00245 WP_003226760.1 44294..44584(-) (abrB) [Bacillus subtilis subsp. subtilis strain ps4060]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=596468 K4756_RS00245 WP_003226760.1 44294..44584(-) (abrB) [Bacillus subtilis subsp. subtilis strain ps4060]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1