Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M9O78_RS18890 Genome accession   NZ_CP097726
Coordinates   3980631..3981071 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain MS1050     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3975631..3986071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O78_RS18870 (M9O78_18860) aroP 3976629..3978002 (+) 1374 WP_000969912.1 aromatic amino acid transporter AroP -
  M9O78_RS18875 (M9O78_18865) ampE 3978045..3978899 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  M9O78_RS18880 (M9O78_18870) ampD 3978896..3979447 (-) 552 WP_000923726.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M9O78_RS18885 (M9O78_18875) nadC 3979535..3980428 (+) 894 WP_001135167.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M9O78_RS18890 (M9O78_18880) pilA 3980631..3981071 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  M9O78_RS18895 (M9O78_18885) pilB 3981081..3982466 (+) 1386 WP_001025168.1 type II secretion system protein GspE Machinery gene
  M9O78_RS18900 (M9O78_18890) hofC 3982456..3983658 (+) 1203 WP_000157287.1 protein transport protein HofC -
  M9O78_RS18905 (M9O78_18895) guaC 3983693..3984736 (-) 1044 WP_001217337.1 GMP reductase -
  M9O78_RS18910 (M9O78_18900) - 3984892..3984936 (-) 45 WP_120795372.1 protein YacM -
  M9O78_RS18915 (M9O78_18905) coaE 3984961..3985581 (+) 621 WP_001269513.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=596457 M9O78_RS18890 WP_000360904.1 3980631..3981071(+) (pilA) [Escherichia coli strain MS1050]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=596457 M9O78_RS18890 WP_000360904.1 3980631..3981071(+) (pilA) [Escherichia coli strain MS1050]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGTAATGGCATCCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGTTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363