Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   M9O79_RS21380 Genome accession   NZ_CP097721
Coordinates   4473838..4474863 (+) Length   341 a.a.
NCBI ID   WP_000644897.1    Uniprot ID   B7LA31
Organism   Escherichia coli strain MS1665     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4468838..4479863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O79_RS21370 (M9O79_21370) rpmE 4471069..4471281 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  M9O79_RS21375 (M9O79_21375) priA 4471484..4473682 (+) 2199 WP_267320596.1 primosomal protein N' Machinery gene
  M9O79_RS21380 (M9O79_21380) cytR 4473838..4474863 (+) 1026 WP_000644897.1 DNA-binding transcriptional regulator CytR Regulator
  M9O79_RS21385 (M9O79_21385) ftsN 4474955..4475914 (+) 960 WP_000068834.1 cell division protein FtsN -
  M9O79_RS21390 (M9O79_21390) hslV 4476007..4476537 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  M9O79_RS21395 (M9O79_21395) hslU 4476547..4477878 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  M9O79_RS21400 (M9O79_21400) menA 4477945..4478871 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  M9O79_RS21405 (M9O79_21405) rraA 4478964..4479449 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  M9O79_RS21410 (M9O79_21410) zapB 4479534..4479779 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=596301 M9O79_RS21380 WP_000644897.1 4473838..4474863(+) (cytR) [Escherichia coli strain MS1665]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALHRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=596301 M9O79_RS21380 WP_000644897.1 4473838..4474863(+) (cytR) [Escherichia coli strain MS1665]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCATCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625